View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_55 (Length: 378)
Name: NF19103_low_55
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 119 - 363
Target Start/End: Complemental strand, 34365600 - 34365356
Alignment:
| Q |
119 |
gaagtttgagatagtggtgtatactttatctattggccatgcactataaatataatttcttctcgagtcttacctaatcacactagctagtcaataatca |
218 |
Q |
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| T |
34365600 |
gaagtttgagatagtggtgtatactttatctattggccatgcactataaatataatttcttttcgagtcttacctaatcacactagctagtcaataatca |
34365501 |
T |
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| Q |
219 |
atgtgttttgaattaattatagtaaaactgattaaataaatgtttgattgcatgaaagttgacacgtaagaaatttcaccttggatgattgtcgaatgtg |
318 |
Q |
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| T |
34365500 |
atgtggtttgaattaattatagtaaaactgattaaataaatgtctgattgcatgaaagttgacacgtaagaaatttcaccttggatgattgtcgaatatg |
34365401 |
T |
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| Q |
319 |
tatttgccagatcaattaatccatatacattcatatatgtgtagt |
363 |
Q |
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| T |
34365400 |
tatttgccagatcaattaatccatatacattcatatatgtgtagt |
34365356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 34365703 - 34365666
Alignment:
| Q |
16 |
aaatgaaagaaagtggtgagacggtactatatattatg |
53 |
Q |
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| T |
34365703 |
aaatgcaagaaagtggtgagacggtactatatattatg |
34365666 |
T |
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