View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_56 (Length: 378)

Name: NF19103_low_56
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_56
NF19103_low_56
[»] chr2 (14 HSPs)
chr2 (179-368)||(30025830-30026019)
chr2 (179-368)||(30116103-30116292)
chr2 (179-368)||(30034680-30034867)
chr2 (179-368)||(30228818-30229005)
chr2 (179-368)||(30130855-30131046)
chr2 (181-368)||(30059990-30060179)
chr2 (1-114)||(30131111-30131224)
chr2 (1-114)||(30025652-30025765)
chr2 (1-114)||(30034932-30035045)
chr2 (1-114)||(30116357-30116470)
chr2 (1-114)||(30229070-30229183)
chr2 (26-114)||(30059835-30059923)
chr2 (14-111)||(30282258-30282356)
chr2 (316-362)||(30255019-30255065)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 179 - 368
Target Start/End: Original strand, 30025830 - 30026019
Alignment:
Q  179 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagttggataa 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||    
T  30025830 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcataggttgtatcttcatgtttcccaatcaaagctagtcggctaa 30025929  T
Q  279 tctcgaatggcactaagcatttaccacttctgtcgcttgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30025930 tctcgaatggcactaagcatttaccacttctgtcgcttgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 30026019  T

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Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 30116292 - 30116103
Alignment:
Q  179 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagttggataa 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||    
T  30116292 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcataggttgtatcttcatgtttcccaatcaaagctagtcggctaa 30116193  T
Q  279 tctcgaatggcactaagcatttaccacttctgtcgcttgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30116192 tctcgaatggcactaagcatttaccacttctgtcgcttgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 30116103  T

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Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 30034867 - 30034680
Alignment:
Q  179 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagttggataa 278  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||    
T  30034867 gtcatacattaatctttttctttcttattttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagatagtcggctaa 30034768  T
Q  279 tctcgaatggcactaagcatttaccac--ttctgtcgcttgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 368  Q
    |||||||||||||||||||||||||||  |  ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034767 tctcgaatggcactaagcatttaccaccatcatg----atgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 30034680  T

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Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 30229005 - 30228818
Alignment:
Q  179 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagttggataa 278  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||    
T  30229005 gtcatacattaatctttttctttcttattttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagatagtcggctaa 30228906  T
Q  279 tctcgaatggcactaagcatttaccac--ttctgtcgcttgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 368  Q
    |||||||||||||||||||||||||||  |  ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30228905 tctcgaatggcactaagcatttaccaccatcatg----atgtatcagtttaatgacttttctatgataacgacttctgtcgcttgttctctg 30228818  T

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Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 30131046 - 30130855
Alignment:
Q  179 gtcatacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagttggataa 278  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  30131046 gtcatacattaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagtcggctaa 30130947  T
Q  279 tctcgaatggcactaagcatttaccac--ttctgtcgcttgtatcag----tttaatgacttttctatgataacgacttctgtcgcttgttctctg 368  Q
    |||||||||||||||||||||||||||  |  ||     ||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  30130946 tctcgaatggcactaagcatttaccaccatcatg----atgtatcagttaatttaatgacttttctatgataacgacttctgtcgcttgttctctg 30130855  T

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Target: chr2; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 181 - 368
Target Start/End: Original strand, 30059990 - 30060179
Alignment:
Q  181 catacataaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagttggataatc 280  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  30059990 catacattaatctttttctttcttgttttgatgattgtttcttatcttcatttcctaggttgtatcttcatgtttcccaatcaaagctagtcggctaatc 30060089  T
Q  281 tcgaatggcactaagcatttaccac--ttctgtcgcttgtatcag----tttaatgacttttctatgataacgacttctgtcgcttgttctctg 368  Q
    |||||||||||||||||||||||||  |  ||     ||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  30060090 tcgaatggcactaagcatttaccaccatcatg----atgtatcagttaatttaatgacttttctatgataacgacttctgtcgcttgttctctg 30060179  T

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Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30131224 - 30131111
Alignment:
Q  1 ttttctgaagatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30131224 ttttctgaatatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 30131125  T
Q  101 tcaccacattgtga 114  Q
    ||||||||||||||    
T  30131124 tcaccacattgtga 30131111  T

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Target: chr2; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 30025652 - 30025765
Alignment:
Q  1 ttttctgaagatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30025652 ttttctgaatatacagaactctaccgatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 30025751  T
Q  101 tcaccacattgtga 114  Q
    ||||||||||||||    
T  30025752 tcaccacattgtga 30025765  T

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Target: chr2; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30035045 - 30034932
Alignment:
Q  1 ttttctgaagatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 100  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30035045 ttttatgaatatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 30034946  T
Q  101 tcaccacattgtga 114  Q
    ||||||||||||||    
T  30034945 tcaccacattgtga 30034932  T

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Target: chr2; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30116470 - 30116357
Alignment:
Q  1 ttttctgaagatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30116470 ttttctgaatatacagaactctaccgatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 30116371  T
Q  101 tcaccacattgtga 114  Q
    ||||||||||||||    
T  30116370 tcaccacattgtga 30116357  T

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Target: chr2; HSP #11
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30229183 - 30229070
Alignment:
Q  1 ttttctgaagatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 100  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30229183 ttttatgaatatacagaactctacggatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaa 30229084  T
Q  101 tcaccacattgtga 114  Q
    ||||||||||||||    
T  30229083 tcaccacattgtga 30229070  T

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Target: chr2; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 30059835 - 30059923
Alignment:
Q  26 gatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaatcaccacattgtga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059835 gatgattaggtttgtcctcaaagtttaatggagggtcaactagataattcgttgcaatcacctggtaattcagaatcaccacattgtga 30059923  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 30282258 - 30282356
Alignment:
Q  14 cagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtcaactagataattcgttgcaatcacctggtaattcagaatcaccacattg 111  Q
    |||||||||| |||||| |  ||||||||||||| ||| |||| ||| |||| | |||||||| | |||| |||||||||||||||||||| |||||||    
T  30282258 cagaactctaaggatgaatgagtttgtcctcaaaatttgaatgaaggctcaagtcgataattcctcgcaaccacctggtaattcagaatcagcacattg 30282356  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 30255019 - 30255065
Alignment:
Q  316 tgtatcagtttaatgacttttctatgataacgacttctgtcgcttgt 362  Q
    ||||||||  |||||||||||||||||||| |||||||||| |||||    
T  30255019 tgtatcagcctaatgacttttctatgataatgacttctgtctcttgt 30255065  T

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