View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_59 (Length: 368)

Name: NF19103_low_59
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_59
NF19103_low_59
[»] chr6 (5 HSPs)
chr6 (22-350)||(5140254-5140592)
chr6 (36-148)||(5575673-5575786)
chr6 (36-148)||(181249-181361)
chr6 (29-148)||(4745106-4745223)
chr6 (36-141)||(2613597-2613702)
[»] chr7 (3 HSPs)
chr7 (29-148)||(42541734-42541854)
chr7 (29-148)||(24282601-24282722)
chr7 (30-82)||(43269608-43269660)
[»] chr5 (3 HSPs)
chr5 (29-148)||(9978494-9978613)
chr5 (29-149)||(10621077-10621199)
chr5 (36-138)||(31627431-31627534)
[»] chr3 (7 HSPs)
chr3 (29-148)||(48922285-48922404)
chr3 (29-148)||(1327645-1327766)
chr3 (29-143)||(9795109-9795225)
chr3 (36-148)||(38670674-38670787)
chr3 (29-148)||(10284046-10284166)
chr3 (37-145)||(16868528-16868637)
chr3 (37-141)||(36461839-36461946)
[»] chr8 (2 HSPs)
chr8 (29-146)||(10637019-10637137)
chr8 (238-306)||(5549527-5549596)
[»] chr4 (5 HSPs)
chr4 (29-145)||(17261789-17261906)
chr4 (29-148)||(15496762-15496882)
chr4 (29-148)||(52576208-52576328)
chr4 (29-148)||(24177462-24177584)
chr4 (37-148)||(19838954-19839066)
[»] chr2 (2 HSPs)
chr2 (36-145)||(42236158-42236269)
chr2 (67-148)||(7016750-7016834)
[»] chr1 (3 HSPs)
chr1 (38-146)||(50224677-50224787)
chr1 (29-148)||(17648863-17648980)
chr1 (195-312)||(15806085-15806203)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 5140254 - 5140592
Alignment:
Q  22 attattctagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaagtatcatttcttaacaaatttaac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5140254 attattctagtggataattaatataggaaaataatgaattgtgatttcaattattagaagagaaaatatggaaaaagtatcatttattaacaaatttaac 5140353  T
Q  122 ataataatcaactttcttaaaacccgtannnnnnnnnnnnnnnaaaaggattctgtaaaaggaaaggaatgga----aggggcagagccagctggatttg 217  Q
    |||||||||||||||||||||| || ||               ||||||||||||||||||||||||||||||    |||||| ||||||||||| ||||    
T  5140354 ataataatcaactttcttaaaatccatatttttttttctttttaaaaggattctgtaaaaggaaaggaatggaagccaggggcggagccagctgggtttg 5140453  T
Q  218 agggtgtgcaggtgcacaccctggaactttccaatttatgtctattattat------ctgattttgctatttgcacaccctcaggttttccttttgcacc 311  Q
    |||||| |||  ||||||||||||||||||||||||||||| |||||||||      ||||||||||||||||||||||||||| |||||||||||||||    
T  5140454 agggtgagcacctgcacaccctggaactttccaatttatgtttattattatattatactgattttgctatttgcacaccctcagtttttccttttgcacc 5140553  T
Q  312 tgcagactgtgatatagacatgtttcttattgctatttg 350  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5140554 tgcagactgtgatatagacatgtttcttattgctatttg 5140592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 5575673 - 5575786
Alignment:
Q  36 taattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaa-aagtatcatttcttaacaaatttaacataataatcaact 134  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| || |||||||| | ||||||||||||| |||||||||||    
T  5575673 taattaatataggaaaataatgaattgtgatttcaattattacaagggcaaacatggaaagaaatatcatttgtcaacaaatttaacacaataatcaact 5575772  T
Q  135 ttcttaaaacccgt 148  Q
    ||||||||||||||    
T  5575773 ttcttaaaacccgt 5575786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 181249 - 181361
Alignment:
Q  36 taattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaagtatcatttcttaacaaatttaacataataatcaactt 135  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||| |||||||| | ||||||||||| | |||||| || ||    
T  181249 taatttatataggaaaataatgaattgtgatttcaatgattagaagggcaaacatgaaaaaaatatcatttatcaacaaatttaatacaataataaaatt 181348  T
Q  136 tcttaaaacccgt 148  Q
    |||||||||||||    
T  181349 tcttaaaacccgt 181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 4745223 - 4745106
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaag-tatcatttcttaacaaatttaacataata 127  Q
    |||||| ||||||||||||||||||| |||||||||   |||||||||||||||| ||| |||||||||  | |||||| | ||||||||||||| ||||    
T  4745223 tagtgggtaattaatataggaaaatagtgaattgtg---tcaattattagaagggcaaacatggaaaaatatgtcatttgtcaacaaatttaacaaaata 4745127  T
Q  128 atcaactttcttaaaacccgt 148  Q
    |||||||||||||||||||||    
T  4745126 atcaactttcttaaaacccgt 4745106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 2613702 - 2613597
Alignment:
Q  36 taattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaagtatcatttcttaacaaatttaacataataatcaactt 135  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||| ||| |||| |||| ||| |||| | ||||||||||| | ||| ||||||||    
T  2613702 taattaatatagaaaaataataagttgtgatttcaattattagaagggtaaacatggcaaaaatattatttgtcaacaaatttaatacaattatcaactt 2613603  T
Q  136 tcttaa 141  Q
    ||||||    
T  2613602 tcttaa 2613597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 42541734 - 42541854
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg-aaaaagtatcatttcttaacaaatttaacataata 127  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |||||||| | ||||||||||||| ||||    
T  42541734 tagtgggtaattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaatatcatttatcaacaaatttaacaaaata 42541833  T
Q  128 atcaactttcttaaaacccgt 148  Q
    |||||||||||||||||||||    
T  42541834 atcaactttcttaaaacccgt 42541854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 24282601 - 24282722
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatg--gaaaaagtatcatttcttaacaaatttaacataat 126  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||| | |||||| | ||||||||||||| |||    
T  24282601 tagtgggtaattaatataggaaaataatgaattgtgatttcaattattagaagggcaaacatgaaaaaaaaatgtcatttgtcaacaaatttaacaaaat 24282700  T
Q  127 aatcaactttcttaaaacccgt 148  Q
    ||||||||||||||||||||||    
T  24282701 aatcaactttcttaaaacccgt 24282722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 43269660 - 43269608
Alignment:
Q  30 agtggataattaatataggaaaataatgaattgtgatttcaattattagaagg 82  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  43269660 agtgggtaattagtataggaaaataatgagttgtgatttcaattattagaagg 43269608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 9978494 - 9978613
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaagtatcatttcttaacaaatttaacataataa 128  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||||||| | ||||||||||||| |||||    
T  9978494 tagtgggtaattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaatatcatttgtcaacaaatttaacaaaataa 9978593  T
Q  129 tcaactttcttaaaacccgt 148  Q
    |||| ||| |||||||||||    
T  9978594 tcaatttttttaaaacccgt 9978613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 10621077 - 10621199
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaa--agtatcatttcttaacaaatttaacataat 126  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||  | |||||||| | ||||||||||||| |||    
T  10621077 tagtgggtaattaatataggaaaataatgaattgtgattttaattattagaagggtaaacatggaaaaataatatcatttgtcaacaaatttaacacaat 10621176  T
Q  127 aatcaactttcttaaaacccgta 149  Q
    ||||||||||||||||| |||||    
T  10621177 aatcaactttcttaaaaaccgta 10621199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 31627534 - 31627431
Alignment:
Q  36 taattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaa-aaagtatcatttcttaacaaatttaacataataatcaact 134  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||| ||| | |||| ||| |||||||| | ||||||||||||| ||||||||||     
T  31627534 taattaaaataggaaaataatgaattgtgattttaattattagaagggtaaacaaggaagaaaatatcatttatcaacaaatttaacacaataatcaaca 31627435  T
Q  135 ttct 138  Q
    ||||    
T  31627434 ttct 31627431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 48922285 - 48922404
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaagtatcatttcttaacaaatttaacataataa 128  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| | ||||||||||| | |||||    
T  48922285 tagtgggtagttaatataggaaaataatgaactgtgatttcaattattagaagggcaaacatggaaaaaatatcatttatcaacaaatttaatacaataa 48922384  T
Q  129 tcaactttcttaaaacccgt 148  Q
    ||||||||||||||||||||    
T  48922385 tcaactttcttaaaacccgt 48922404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 1327766 - 1327645
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg--aaaaagtatcatttcttaacaaatttaacataat 126  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||  ||||| | |||||| | ||||||||||||| |||    
T  1327766 tagtgggtaattaatataggaaaatagtgaattgtgatttcaattattagaagagcaaacatggaaaaaaaatgtcatttgtcaacaaatttaacaaaat 1327667  T
Q  127 aatcaactttcttaaaacccgt 148  Q
    ||||||||||||||||||||||    
T  1327666 aatcaactttcttaaaacccgt 1327645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 9795109 - 9795225
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg--aaaaagtatcatttcttaacaaatttaacataat 126  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  ||||| | |||||| | ||||||||||||| |||    
T  9795109 tagtggataattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaaatgtcatttgtcaacaaatttaacaaaat 9795208  T
Q  127 aatcaactttcttaaaa 143  Q
    |||||||||| ||||||    
T  9795209 aatcaactttattaaaa 9795225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 38670674 - 38670787
Alignment:
Q  36 taattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg-aaaaagtatcatttcttaacaaatttaacataataatcaact 134  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| | |||||| | ||||||||||||| |||||||||||    
T  38670674 taatcaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaatgtcatttgtcaacaaatttaacaaaataatcaact 38670773  T
Q  135 ttcttaaaacccgt 148  Q
    || |||||||||||    
T  38670774 ttgttaaaacccgt 38670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 10284166 - 10284046
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg-aaaaagtatcatttcttaacaaatttaacataata 127  Q
    |||||| |||||||||||| |||||| ||||||| |||||||||||| ||||||| ||| |||| ||||| | |||||| | ||||||||||||| ||||    
T  10284166 tagtgggtaattaatatagtaaaatagtgaattgcgatttcaattataagaagggcaaacatggaaaaaaatgtcatttgtcaacaaatttaacaaaata 10284067  T
Q  128 atcaactttcttaaaacccgt 148  Q
    |||||||||||||||||||||    
T  10284066 atcaactttcttaaaacccgt 10284046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 16868637 - 16868528
Alignment:
Q  37 aattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaa-aagtatcatttcttaacaaatttaacataataatcaactt 135  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||| |||  | |||||||| | ||||||||||||| ||||||| ||||    
T  16868637 aattattataggaaaataatgaattgcgatttcaattattagaagggcaaacatgaaaaggaatatcatttgtcaacaaatttaacacaataatctactt 16868538  T
Q  136 tcttaaaacc 145  Q
    ||||||||||    
T  16868537 tcttaaaacc 16868528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 36461946 - 36461839
Alignment:
Q  37 aattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaa---gtatcatttcttaacaaatttaacataataatcaac 133  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||| ||| ||| |||||    |||||||| | || |||||||| | ||||||||||    
T  36461946 aattaatataggaaaataatgagttttgatttcaaatattagaagggtaaacatgtaaaaaaatatatcatttatcaataaatttaatacaataatcaac 36461847  T
Q  134 tttcttaa 141  Q
    ||||||||    
T  36461846 tttcttaa 36461839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 10637019 - 10637137
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg-aaaaagtatcatttcttaacaaatttaacataata 127  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |||||||| | ||||||||||||| ||||    
T  10637019 tagtgggtaattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaatatcatttgtcaacaaatttaacaaaata 10637118  T
Q  128 atcaactttcttaaaaccc 146  Q
    |||||||||||||||||||    
T  10637119 atcaactttcttaaaaccc 10637137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 5549596 - 5549527
Alignment:
Q  238 ctggaactttccaatttatgtctattattat-ctgattttgctatttgcacaccctcaggttttcctttt 306  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  5549596 ctggaactttccaatttatggctattattatactgatattgctatttgcacgccctcagtttttcctttt 5549527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 17261789 - 17261906
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaa-aagtatcatttcttaacaaatttaacataata 127  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||| |||| | || |||||||||| ||||    
T  17261789 tagtggttaattaatataggaaaataatgaattgtgatttcaattattagaagggcaaacatggaaagaaatattatttgtcaataaatttaacacaata 17261888  T
Q  128 atcaactttcttaaaacc 145  Q
    ||||||||||||||||||    
T  17261889 atcaactttcttaaaacc 17261906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 15496762 - 15496882
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg-aaaaagtatcatttcttaacaaatttaacataata 127  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |  ||||| | ||||||||||||| ||||    
T  15496762 tagtgggtaattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaatgccatttgtcaacaaatttaacaaaata 15496861  T
Q  128 atcaactttcttaaaacccgt 148  Q
    |||||||||||||||||||||    
T  15496862 atcaactttcttaaaacccgt 15496882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 52576208 - 52576328
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg-aaaaagtatcatttcttaacaaatttaacataata 127  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| | |||||| | ||||||||||| | ||||    
T  52576208 tagtgggtaattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaatttcatttgtcaacaaatttaataaaata 52576307  T
Q  128 atcaactttcttaaaacccgt 148  Q
    |||||||||||||||| ||||    
T  52576308 atcaactttcttaaaatccgt 52576328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 24177584 - 24177462
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatg---gaaaaagtatcatttcttaacaaatttaacataa 125  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||    ||||| |||||||| | ||||||||||| | ||    
T  24177584 tagtgggtaattaatataggaaaataatgaactgtgatttcaattattagaagtgtaaacatgaaaaaaaaaatatcatttgtcaacaaatttaatacaa 24177485  T
Q  126 taatcaactttcttaaaacccgt 148  Q
    |||||||||||||||||||||||    
T  24177484 taatcaactttcttaaaacccgt 24177462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 19839066 - 19838954
Alignment:
Q  37 aattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaag-tatcatttcttaacaaatttaacataataatcaactt 135  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||  | |  ||| | ||||||||||||| ||||||||||||    
T  19839066 aattaatataggaaaatagtgaattgtgatttcaattattagaagggcaaacatggaaaaaaatgttgtttgtcaacaaatttaacaaaataatcaactt 19838967  T
Q  136 tcttaaaacccgt 148  Q
    ||||| |||||||    
T  19838966 tcttagaacccgt 19838954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 42236269 - 42236158
Alignment:
Q  36 taattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatgg--aaaaagtatcatttcttaacaaatttaacataataatcaac 133  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||  ||||| |||||||| | || |||||||||| |||||| |||    
T  42236269 taattaatataggaaaataataagttgtgatttcaattattagaagggcaaacatggaaaaaaattatcatttgtcaataaatttaacacaataattaac 42236170  T
Q  134 tttcttaaaacc 145  Q
    ||||||||||||    
T  42236169 tttcttaaaacc 42236158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 7016750 - 7016834
Alignment:
Q  67 ttcaattattagaagggaaaatatgga---aaaagtatcatttcttaacaaatttaacataataatcaactttcttaaaacccgt 148  Q
    |||||||| |||||||| ||| |||||   |||| |||||||| | ||||||| ||||| |||||||||||||||||||| ||||    
T  7016750 ttcaattaatagaagggcaaacatggagaaaaaaatatcatttgtcaacaaatgtaacacaataatcaactttcttaaaatccgt 7016834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 50224787 - 50224677
Alignment:
Q  38 attaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaa--gtatcatttcttaacaaatttaacataataatcaactt 135  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  ||| |   |||||   |||||||| | ||||||||||||| ||||||||||||    
T  50224787 attaatatagaaaaataatgaattgtgatttcaattattagaaggacaaacagaaaaaaaatatatcatttgtcaacaaatttaacacaataatcaactt 50224688  T
Q  136 tcttaaaaccc 146  Q
    |||||||||||    
T  50224687 tcttaaaaccc 50224677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 17648980 - 17648863
Alignment:
Q  29 tagtggataattaatataggaaaataatgaattgtgatttcaattattagaagggaaaatatggaaaaagta--tcatttcttaacaaatttaacataat 126  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||| |||||||||  |  |||||| | ||||||||||||| |||    
T  17648980 tagtgggtaattaatataggaaaatggtgaattgtgatttcaattattagaagggcaaacatggaaaaaaaaagtcatttgtcaacaaatttaacaaaat 17648881  T
Q  127 aatcaactttcttaaaacccgt 148  Q
        ||||||||||||||||||    
T  17648880 ----aactttcttaaaacccgt 17648863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 15806203 - 15806085
Alignment:
Q  195 aggggcagagccagctggatttgagggtgtgcaggtgcacaccctggaactttccaatttatgtctattattat-ctgattttgctatttgcacaccctc 293  Q
    |||||| |||||| ||||  | |||||||||||  |||| ||||||||  ||| || | |||| |||||| ||| ||||| ||| |||||||||||||||    
T  15806203 aggggcggagccacctgggctcgagggtgtgcacctgcataccctggattttttcattgtatgcctattaatatactgatattgatatttgcacaccctc 15806104  T
Q  294 aggttttccttttgcacct 312  Q
    |  ||||||||||||||||    
T  15806103 aatttttccttttgcacct 15806085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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