View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_6 (Length: 565)

Name: NF19103_low_6
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_6
NF19103_low_6
[»] chr4 (2 HSPs)
chr4 (12-140)||(495864-495992)
chr4 (12-140)||(18193525-18193653)
[»] chr5 (3 HSPs)
chr5 (12-140)||(34660870-34660998)
chr5 (86-137)||(12065994-12066045)
chr5 (81-140)||(12065989-12066048)
[»] chr3 (7 HSPs)
chr3 (139-267)||(53985709-53985836)
chr3 (436-550)||(53985536-53985650)
chr3 (12-140)||(21891440-21891569)
chr3 (142-264)||(53972155-53972277)
chr3 (86-136)||(21891515-21891566)
chr3 (206-264)||(53341064-53341122)
chr3 (212-264)||(53059015-53059067)
[»] chr8 (1 HSPs)
chr8 (12-112)||(21352153-21352253)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-86)||(181585-181659)
[»] chr2 (1 HSPs)
chr2 (181-251)||(44253233-44253303)
[»] chr7 (4 HSPs)
chr7 (172-250)||(19934354-19934432)
chr7 (172-250)||(19965493-19965571)
chr7 (185-250)||(19926453-19926518)
chr7 (212-264)||(31013717-31013769)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 495864 - 495992
Alignment:
Q  12 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  495864 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 495963  T
Q  112 tagcaatagggaataagaatgaaaaggtc 140  Q
    |||||||||||||||||||||||||||||    
T  495964 tagcaatagggaataagaatgaaaaggtc 495992  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 18193525 - 18193653
Alignment:
Q  12 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18193525 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 18193624  T
Q  112 tagcaatagggaataagaatgaaaaggtc 140  Q
    |||||||||||||||||||||||||||||    
T  18193625 tagcaatagggaataagaatgaaaaggtc 18193653  T

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Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 34660870 - 34660998
Alignment:
Q  12 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34660870 tactacggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccaggatcataaaaagcttaacacttttcattcttattccctttttcaa 34660969  T
Q  112 tagcaatagggaataagaatgaaaaggtc 140  Q
    |||||||||||||||||||||||||||||    
T  34660970 tagcaatagggaataagaatgaaaaggtc 34660998  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 12066045 - 12065994
Alignment:
Q  86 cttttcattcttattccctttttcaatagcaatagggaataagaatgaaaag 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12066045 cttttcattcttattccctttttcaatagcaatagggaataagaatgaaaag 12065994  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 12065989 - 12066048
Alignment:
Q  81 taacacttttcattcttattccctttttcaatagcaatagggaataagaatgaaaaggtc 140  Q
    |||||||||||||||||||||||| || | || | || ||||||||||||||||||||||    
T  12065989 taacacttttcattcttattccctattgctattgaaaaagggaataagaatgaaaaggtc 12066048  T

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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 53985836 - 53985709
Alignment:
Q  139 tcgtgcgatgtcgtcatcttctctcttccatcaatcaattttaaccgaagataggatcagtgctctgccagattcaattatctctcacatactctctttt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53985836 tcgtgcgatgtcgtcatcttctctcttccatcaatcaattttaaccgaagatag-atcagtgctctgccagattcaattatctctcacatactctctttt 53985738  T
Q  239 cttccaaccaaagactccgccgccacgtg 267  Q
    |||||||||||||| ||||||||||||||    
T  53985737 cttccaaccaaagattccgccgccacgtg 53985709  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 53985650 - 53985536
Alignment:
Q  436 gtctatatgacatcaatgacgtcaacagatttatcaacgcagcactggaacgaaaaactgaaaacctagaacttaatatgatgtgttggccggaagatca 535  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53985650 gtctatatgacatcaatgacgtcaacagatttatcaacacagcactggaacgaaaaactgaaaacctagaacttaatatgatgtgttggccagaagatca 53985551  T
Q  536 tattacagttaaatt 550  Q
    |||||||||||||||    
T  53985550 tattacagttaaatt 53985536  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 21891440 - 21891569
Alignment:
Q  12 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 111  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||| ||||||||||||||| |||||||||||||||||| || | |    
T  21891440 tactgcggtgacgatactgtaggggaggtcctacggaaaaatagctcggcaccaggatgataaaaagcttaacatttttcattcttattccctattgcta 21891539  T
Q  112 tag-caatagggaataagaatgaaaaggtc 140  Q
    | |  || ||||||||||||||||||||||    
T  21891540 ttgaaaaaagggaataagaatgaaaaggtc 21891569  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 53972277 - 53972155
Alignment:
Q  142 tgcgatgtcgtcatcttctctcttccatcaatcaattttaaccgaagataggatcagtgctctgccagattcaattatctctcacatactctcttttctt 241  Q
    |||||||||||| |||||||||| |||||  ||||||  ||| ||||||||||||||| ||||||  || |||||||||||| |||||||||||||||||    
T  53972277 tgcgatgtcgtcctcttctctctcccatctgtcaattccaacggaagataggatcagttctctgcatgactcaattatctcttacatactctcttttctt 53972178  T
Q  242 ccaaccaaagactccgccgccac 264  Q
    |||||||||||||||||| ||||    
T  53972177 ccaaccaaagactccgcccccac 53972155  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 21891566 - 21891515
Alignment:
Q  86 cttttcattcttattcccttttt-caatagcaatagggaataagaatgaaaa 136  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21891566 cttttcattcttattcccttttttcaatagcaatagggaataagaatgaaaa 21891515  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 53341122 - 53341064
Alignment:
Q  206 ccagattcaattatctctcacatactctcttttcttccaaccaaagactccgccgccac 264  Q
    ||||| |||||||||| |||||| ||||| ||||| |||||||||||| ||| ||||||    
T  53341122 ccagactcaattatctgtcacattctctcctttctcccaaccaaagacaccgtcgccac 53341064  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 53059015 - 53059067
Alignment:
Q  212 tcaattatctctcacatactctcttttcttccaaccaaagactccgccgccac 264  Q
    |||||||||| |||||| ||||| ||||| |||||||||||| ||| ||||||    
T  53059015 tcaattatctgtcacattctctcctttctcccaaccaaagacaccgtcgccac 53059067  T

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Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 21352153 - 21352253
Alignment:
Q  12 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacacttttcattcttattccctttttcaa 111  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21352153 tactgcggtgacgatactgtaggggaggtcctacgagaaaatagctcggcgccgagatcataaaaagcttaacacttttcattcttattccctttttcaa 21352252  T
Q  112 t 112  Q
    |    
T  21352253 t 21352253  T

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Target: scaffold0002 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 181659 - 181585
Alignment:
Q  12 tactgcggtgacgatactgtaggggaggtcctgcgggaaaatagctcggcgccgggatcataaaaagcttaacac 86  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  ||| | || ||||||||||||||||    
T  181659 tactgcggtgacgatactgtaggggaggtcctgcggcaaaatagctcgatgccagaatgataaaaagcttaacac 181585  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 44253233 - 44253303
Alignment:
Q  181 aaccgaagataggatcagtgctctgccagattcaattatctctcacatactctcttttcttccaaccaaag 251  Q
    ||||||||||||||| ||  |  | |||||||||||||| |||||||| ||||||||||||||||||||||    
T  44253233 aaccgaagataggattagctcctttccagattcaattatatctcacattctctcttttcttccaaccaaag 44253303  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 19934354 - 19934432
Alignment:
Q  172 atcaattttaaccgaagataggatcagtgctctgccagattcaattatctctcacatactctcttttcttccaaccaaa 250  Q
    |||||||| ||| ||||||||||| |||||||| |||||| ||||||| |  ||||| || |||||| |||||||||||    
T  19934354 atcaatttcaactgaagataggattagtgctctaccagatccaattatatggcacatcctatcttttgttccaaccaaa 19934432  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 19965493 - 19965571
Alignment:
Q  172 atcaattttaaccgaagataggatcagtgctctgccagattcaattatctctcacatactctcttttcttccaaccaaa 250  Q
    |||||||| ||| ||||||||||| |||||||| |||||| ||||||| |  ||||| || |||||| |||||||||||    
T  19965493 atcaatttcaactgaagataggattagtgctctaccagatccaattatatggcacatcctatcttttgttccaaccaaa 19965571  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 19926453 - 19926518
Alignment:
Q  185 gaagataggatcagtgctctgccagattcaattatctctcacatactctcttttcttccaaccaaa 250  Q
    |||||||||||||||||||| ||| || ||||||| |  ||||| || ||||||||||||||||||    
T  19926453 gaagataggatcagtgctctaccaaatccaattatatggcacatcctttcttttcttccaaccaaa 19926518  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 31013717 - 31013769
Alignment:
Q  212 tcaattatctctcacatactctcttttcttccaaccaaagactccgccgccac 264  Q
    |||||||||| |||||| ||||| ||||| |||||||||||| ||| ||||||    
T  31013717 tcaattatctgtcacattctctcctttctaccaaccaaagacaccgtcgccac 31013769  T

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