View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_60 (Length: 367)
Name: NF19103_low_60
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 4 - 357
Target Start/End: Original strand, 4560038 - 4560391
Alignment:
| Q |
4 |
tgaccctttatttcttgtttggttaatgttttcacatataaccctttagcttctctatgcattgaatctttgacaatatcaaataaatcaactgatactt |
103 |
Q |
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| T |
4560038 |
tgaccctttatttcttgtttggttaatgttttcacatataactctttagcttctctatgcattgaatctttgacaatatcaaagaaatcaactgatactt |
4560137 |
T |
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| Q |
104 |
ttgaatgtggatttcttgaaatttgaatttgtttggttgacaatgattctgtcttaattattccgttaaattcataggatgtcatgctagatgaacaaga |
203 |
Q |
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| T |
4560138 |
ttgaatgtggatttcttgaaatttgaatttgtttggttgacaatgattctgtcttaattattccgttaaattcataggatgtcatgctagatgaacaaga |
4560237 |
T |
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| Q |
204 |
tgatgaagagacagaagttactgatgattctgtggagaattgttgcttctcttttgcaatcttttgattcttttcctgcattcataatcatatgttatta |
303 |
Q |
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| T |
4560238 |
tgatgaagagacagaagttactgatgattctgtggagaattgttgcttctcttttgcaatcttttgattcttttcctgcattcataatcatatgttatta |
4560337 |
T |
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| Q |
304 |
atggtttttgccaacatttttcaaagagtaaaactatagttatctttacctttg |
357 |
Q |
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| T |
4560338 |
atggtttttgccaacatttttcaaatagtaaaactatagttatctttacctttg |
4560391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 5025723 - 5025835
Alignment:
| Q |
180 |
ggatgtcatgctagatgaacaagatgatgaagagacagaagttactgat---gattctgtggagaattgttgcttctcttttgcaatcttttgattcttt |
276 |
Q |
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| T |
5025723 |
ggatgacatgctagatgaacaagacgacgaagacatggaagttcctgatgatgattctgtggaggattgttgattctctcttggaaccttcacattcttt |
5025822 |
T |
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| Q |
277 |
tcctgcattcata |
289 |
Q |
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| T |
5025823 |
gcctgcaatcata |
5025835 |
T |
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