View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_61 (Length: 367)
Name: NF19103_low_61
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 37491615 - 37491854
Alignment:
| Q |
13 |
aatattaattcacttctgaatcttcattttcttttgttgctttcattctcattaatggaatttgtgtttcttgatcttgggtgatttttgttgtaacagc |
112 |
Q |
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| T |
37491615 |
aatattaattcacttctgaatcttcattttcttttgttgctttcattctcattaatggaatttgtgtttcttgatcttgggtgatttttgttgtaacagc |
37491714 |
T |
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| Q |
113 |
agcgtttcttgggggtagggggattccacattcttggtttggtaaggattaatctcaatttctttttcttcttcaaatcttatgtcttgtatatatata- |
211 |
Q |
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| T |
37491715 |
agcgtttcttgggggtagggggattccacattcttggtttggtaaggattaatctcaatttctttttctttttcaaatcttatgtcttgtatatatatat |
37491814 |
T |
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| Q |
212 |
gtagcaattacacttctgatcgaaggcgtaccccggtgtc |
251 |
Q |
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| T |
37491815 |
atagcaaatacacttctgatggaaggtgtaccccggtgtc |
37491854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 37491918 - 37492022
Alignment:
| Q |
247 |
gtgtcagtgtgtccgtgcttcgtatcatctactagcgatcgttacatatatgtgattttagtcatataaaccttagtcatacaaatgatgtttaatggtt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491918 |
gtgtcagtgtgtccgtgcttcgtatcatctactagcgatcattacatatatgtgattttagtcatataaaccttagtcatacaaatgatgtttaatggtt |
37492017 |
T |
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| Q |
347 |
gtgtg |
351 |
Q |
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| T |
37492018 |
gtgtg |
37492022 |
T |
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