View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_63 (Length: 361)
Name: NF19103_low_63
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 8039831 - 8039978
Alignment:
| Q |
158 |
ttcatgaaacggtgaaattgatggcggattctggatttgagaaagagtgctatgagatttacaacagttaccgtaaggaatggtcggaagatggataaaa |
257 |
Q |
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| T |
8039831 |
ttcatgaaacggtgaaattgatggcggattctggatttgagaaagagtgctatgagatttacaacagttactgtaaggaatggttggaagatggataaaa |
8039930 |
T |
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| Q |
258 |
acttccaagggtcgctcttagaatactatttcccagtgagcgtcaactg |
306 |
Q |
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| T |
8039931 |
acttccaa-ggtcgctcttagaatactatttcccggtgagcgtcaactg |
8039978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 8039561 - 8039687
Alignment:
| Q |
10 |
attattctttgttactctctgtcttccccatatggtacagaagaaattcagcgtcctggactcgatgaacaacacgtagtcattcgagttgattcataac |
109 |
Q |
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| T |
8039561 |
attattctttgttactctctgtcttccccagatggtacagaagaaattcagcgtcctggactcgatgaacaacacgtagtcattcgagttgattcataac |
8039660 |
T |
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| Q |
110 |
aaccacaataatggtagcaacattata |
136 |
Q |
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| T |
8039661 |
aaccacaataattgtagcaacattata |
8039687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 8034419 - 8034509
Alignment:
| Q |
158 |
ttcatgaaacggtgaaattgatggcggattctggatttgagaaagagtgctatgagatttacaacagttaccgtaaggaatggtcggaaga |
248 |
Q |
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| T |
8034419 |
ttcatgaaacggtgaaattgatggtggattctggatttgagaaagagtgctatgagatttacgacagttactgtaaggaatggttggaaga |
8034509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 8040056 - 8040100
Alignment:
| Q |
300 |
tcaactgctgatttttgctgattcgtttgcaaattgaagccattc |
344 |
Q |
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| T |
8040056 |
tcaactgctgatttttgctgattcgtttgcaaattgaagccattc |
8040100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 8034689 - 8034733
Alignment:
| Q |
300 |
tcaactgctgatttttgctgattcgtttgcaaattgaagccattc |
344 |
Q |
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| T |
8034689 |
tcaactgctgaattttgctgattcgtttgctaattgaagtcattc |
8034733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 8034545 - 8034612
Alignment:
| Q |
243 |
ggaagatggataaaaacttccaagggtcgctc----ttagaatactatttcccagtgagcgtcaactgc |
307 |
Q |
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| T |
8034545 |
ggaagatggataaaaacttccaa-ggtcgttcttaattagaatactatttcccagggagcatcaactgc |
8034612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 31402144 - 31402220
Alignment:
| Q |
172 |
aaattgatggcggattctggatttgagaaagagtgctatgagatttacaacagttaccgtaaggaatggtcggaaga |
248 |
Q |
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| T |
31402144 |
aaattgatggtggattctggatttgagaaagagtgctatgagatttacaacagttaccgtaaggaatggttggaaga |
31402220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 31402279 - 31402340
Alignment:
| Q |
243 |
ggaagatggataaaaacttccaagggtcgctcttagaatactatttcccagtgagcgtcaact |
305 |
Q |
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| T |
31402279 |
ggaagatggataaaaacttccaaggtt-gctcttagaatactatttcccagtgaacgtcaact |
31402340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 31402419 - 31402459
Alignment:
| Q |
300 |
tcaactgctgatttttgctgattcgtttgcaaattgaagcc |
340 |
Q |
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| T |
31402419 |
tcaacttctgaattttgctgattcgtttgcaaatcgaagcc |
31402459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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