View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_64 (Length: 350)
Name: NF19103_low_64
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 77 - 329
Target Start/End: Original strand, 15588721 - 15588975
Alignment:
| Q |
77 |
ttgtagtggggtg--gtgtctcacttcaatcttttgannnnnnnnctttctaaaaaggatcaaaatattcctattttcaaattgaattttcataactttt |
174 |
Q |
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| T |
15588721 |
ttgtagtggggtgtggtgtctcacttcaatcttttgattttttttctttctaaaagagatcaaaatattcctactttcaaattgaattttcataactttt |
15588820 |
T |
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| Q |
175 |
tatattctatcatttcctttaaatgcatgaaatcacttatctatgcattatattattattaatggaagatatggtgtttcagtctatctttctttaagtt |
274 |
Q |
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| T |
15588821 |
tatattgtatcatttcctttaaacgcatgaaatcacttatctatgcattatattattattaatggaagatatggtgtttcagtctatctttcattaagtt |
15588920 |
T |
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| Q |
275 |
tgatcacagatctatgagtatttgtgacagatgaagatttgaaatggagatgaaa |
329 |
Q |
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| T |
15588921 |
tgatcacatatctatgaatatttgtgacagatgaagatttgaaaaagagatgaaa |
15588975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 15588458 - 15588535
Alignment:
| Q |
9 |
gagaagaatggaaagtaattgttgcttgctttattttgcaagtgtaaattacaaattttgatgtcttcttgtagtggg |
86 |
Q |
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| T |
15588458 |
gagaagaatggaaagtaattgttgcttgctttattttgcaagtgtaaattacaaattttgatgtcttcttgtagtggg |
15588535 |
T |
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