View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_65 (Length: 350)
Name: NF19103_low_65
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 53984580 - 53984254
Alignment:
| Q |
19 |
gcttgtccaacttgtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaatttctctaaccaccaaaa |
118 |
Q |
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| T |
53984580 |
gcttgtccaacttgtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaatttctctaagcaccaaaa |
53984481 |
T |
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| Q |
119 |
aataatccatgttttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtgtggagggaataatat |
218 |
Q |
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| T |
53984480 |
aataatccatgttttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtgtggagggaataatat |
53984381 |
T |
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| Q |
219 |
tatgtttgtaa-nnnnnnnnnnnnnnnnnnncaacatgcatgatttttactcacgtctcctattattctcatcatatatcttacttaatttcctcccttt |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984380 |
tatgtttgtaatttttttttttttactttttcaacatgcatgatttttactcacgtctcctattattctcatcatatatcttacttaatttcctcccttt |
53984281 |
T |
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| Q |
318 |
ttggtttctttttagccattcatctca |
344 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
53984280 |
ttggtttctttttagccattcttctca |
53984254 |
T |
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