View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_69 (Length: 332)

Name: NF19103_low_69
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_69
NF19103_low_69
[»] chr8 (4 HSPs)
chr8 (193-318)||(41912603-41912728)
chr8 (106-219)||(41912730-41912843)
chr8 (113-271)||(31917158-31917316)
chr8 (7-35)||(41912915-41912943)
[»] chr6 (6 HSPs)
chr6 (113-280)||(1256884-1257051)
chr6 (109-275)||(8752518-8752684)
chr6 (113-280)||(2955965-2956124)
chr6 (113-318)||(8745564-8745761)
chr6 (113-280)||(1258167-1258328)
chr6 (113-160)||(8752049-8752096)
[»] chr4 (10 HSPs)
chr4 (113-280)||(42978641-42978808)
chr4 (113-280)||(10337273-10337439)
chr4 (113-275)||(32082361-32082515)
chr4 (113-280)||(54121997-54122164)
chr4 (113-280)||(54123275-54123434)
chr4 (115-280)||(42977368-42977526)
chr4 (113-280)||(10337898-10338057)
chr4 (113-318)||(16879290-16879494)
chr4 (113-275)||(48712033-48712187)
chr4 (174-280)||(48713245-48713351)
[»] chr5 (12 HSPs)
chr5 (112-318)||(5225329-5225535)
chr5 (115-273)||(5224904-5225061)
chr5 (113-280)||(39101885-39102044)
chr5 (113-280)||(39103141-39103300)
chr5 (113-318)||(8874006-8874201)
chr5 (113-273)||(8872696-8872848)
chr5 (119-188)||(12251200-12251269)
chr5 (147-247)||(11772456-11772556)
chr5 (164-280)||(36619715-36619831)
chr5 (147-247)||(38624919-38625019)
chr5 (147-201)||(17553267-17553321)
chr5 (113-280)||(36620960-36621115)
[»] chr2 (3 HSPs)
chr2 (137-275)||(28563551-28563689)
chr2 (147-247)||(40303496-40303596)
chr2 (147-247)||(45499508-45499608)
[»] chr7 (9 HSPs)
chr7 (113-309)||(30791389-30791585)
chr7 (147-247)||(46245325-46245425)
chr7 (221-302)||(30792660-30792741)
chr7 (230-318)||(9532453-9532541)
chr7 (147-247)||(15135581-15135681)
chr7 (147-231)||(31734511-31734595)
chr7 (151-247)||(37132038-37132134)
chr7 (147-245)||(14780626-14780722)
chr7 (147-245)||(15230645-15230741)
[»] chr1 (5 HSPs)
chr1 (113-318)||(19250884-19251089)
chr1 (113-309)||(41668414-41668602)
chr1 (114-281)||(19249487-19249654)
chr1 (220-318)||(41925251-41925349)
chr1 (113-244)||(19250776-19250907)
[»] chr3 (7 HSPs)
chr3 (113-213)||(31657159-31657259)
chr3 (147-247)||(40499008-40499108)
chr3 (147-247)||(48568286-48568386)
chr3 (147-247)||(31796590-31796690)
chr3 (147-247)||(41083027-41083127)
chr3 (147-184)||(29748142-29748179)
chr3 (117-153)||(31658378-31658414)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 193 - 318
Target Start/End: Complemental strand, 41912728 - 41912603
Alignment:
Q  193 gtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccaca 292  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41912728 gtaccttttcgttttaggtttgtgtccctgtaatatagttaaggatcatttgtcagtctacataaacgtgtttagccaagtcaacacccaccacaccaca 41912629  T
Q  293 cgtcgttagccaacaagacctttttg 318  Q
    ||||||||||||||||||||||||||    
T  41912628 cgtcgttagccaacaagacctttttg 41912603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 41912843 - 41912730
Alignment:
Q  106 tgatccttgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttcttt 205  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  41912843 tgatccttgtaatatggtcatggatcatctggaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatttgtaccttttcgtt 41912744  T
Q  206 ttaggtttgtgtct 219  Q
    ||||||||||||||    
T  41912743 ttaggtttgtgtct 41912730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 31917316 - 31917158
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    |||||||||||||  |||| | | ||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| ||||    
T  31917316 tgtaatatagtcagagatcgtatggaaagccacctaaatttcaaattttgttatttaggtgtttttaatttcgtccctttgtaccttttcgtttttggtt 31917217  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaa 271  Q
    |  ||  || ||||||||||| ||||||| |||||   |||| ||||||||||||||||    
T  31917216 ttggttcctgtaatatagttagggatcatatgtcacaacacacaaacgtgtttagccaa 31917158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 41912943 - 41912915
Alignment:
Q  7 agagaggaagaaaatgaaaacaacaaggg 35  Q
    |||||||||||||||||||||||||||||    
T  41912943 agagaggaagaaaatgaaaacaacaaggg 41912915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 1257051 - 1256884
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||  ||| || |||||||||| |||| ||||    
T  1257051 tgtaatatagtcaggaatcttctggaaggccacctaaatttcatattttgttatttaggtgtttttaattttgtccctctgtaccttttcgtttttggtt 1256952  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  1256951 ttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacc 1256884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 8752518 - 8752684
Alignment:
Q  109 tccttgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttcttttta 208  Q
    ||||||||||||||||| ||||| | | |||||| |||||||||||| ||||||||||| |||||||||||||||  ||| || |||| ||||| ||||     
T  8752518 tccttgtaatatagtcaaggatcttttggaaggcaacctaaatttcatattttgttatttaggtgtttttaattttgtccctctgtactttttcgttttt 8752617  T
Q  209 ggtttgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtca 275  Q
    |||||  ||| || ||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  8752618 ggttttggtccctgtaatatagtcagggatcatctgtcagtccacataaacgtgtttggccaagtca 8752684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 2955965 - 2956124
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||        | |||||||||||||| ||| || |||||||||  |||| ||||    
T  2955965 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattt--------atgtgtttttaatttcgtccctctgtacctttttgtttttggtt 2956056  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  2956057 ttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacc 2956124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 318
Target Start/End: Complemental strand, 8745761 - 8745564
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||        ||||| |||||||||| ||| || |||||||||| |||| ||||    
T  8745761 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattt--------aggtgattttaatttcgtccctctgtaccttttcgtttttggtt 8745670  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagacc 312  Q
    |  ||| || ||||||||| | |||||||| |||||||||||||| ||||||| ||||||| | ||||  ||||| ||| |  ||||||||| |||| |     
T  8745669 ttggtccctgtaatatagtcagggatcatccgtcagtccacataagcgtgtttggccaagttagcacctgccacatcactcaccgttagccagcaaggcg 8745570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 1258167 - 1258328
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    |||||||||||||  |||| | | ||||||||||||||||||| ||||        |||||||||||||||| ||| || |||||||||| |||| || |    
T  1258167 tgtaatatagtcagtgatcttttggaaggccacctaaatttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggct 1258258  T
Q  213 tgtgtctctataatata--gttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||   || | ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  1258259 ttggtccctgtaatatgaggtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacc 1258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 8752096 - 8752049
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattt 160  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||    
T  8752096 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattt 8752049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 42978641 - 42978808
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| |||||||||||| |||||| ||||||||||| |||||||||||||||  |||||| |||||||||| |||  ||||    
T  42978641 tgtaatatagtcagggatcttctggaaggccacctacatttcatattttgttatttaggtgtttttaattttgtccatctgtaccttttcgtttctggtt 42978740  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| |||||||||||  ||||||||||||||||||||||||| |||||||  |||||||| ||||    
T  42978741 ttggtccctataatatagacaaggatcatctgtcagtccacataagcgtgtttgaccaagtcagcacc 42978808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 10337439 - 10337273
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    |||||||||||||  |||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||  ||| ||  ||||||||| |||| ||||    
T  10337439 tgtaatatagtcagagatcttctggaaggccacctaaatttcatattttgttatttaggtgtttttaattttgtcc-tctataccttttcgtttttggtt 10337341  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| |||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  10337340 ttggtccctataatatagtcagggatcatctgtcattccacataaacgtgtttggccaagtcagcacc 10337273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 275
Target Start/End: Original strand, 32082361 - 32082515
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||        |||||||||||||||| ||| || |||||||||| |||| ||||    
T  32082361 tgtaatatagtcagggatcttctagaaggccacctaaatttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggtt 32082452  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtca 275  Q
    |  ||| || ||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  32082453 ttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttagccaagtca 32082515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 54122164 - 54121997
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||  ||| |  |||||||||| |||| ||||    
T  54122164 tgtaatatagtcagggatcttctggaaggccacctaaatttcaaattttattatttaggtgtttttaattttgtccctatgtaccttttcgttttcggtt 54122065  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||||| | | ||||||||||| |||||||||  |||||| ||||||||| ||||    
T  54122064 ttggtccctgtaatatagtcaggaatcatctgtcaatccacataagtgtgtttggccaagtcagcacc 54121997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 54123275 - 54123434
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||        |||||||||||||||| ||| || |||||||||| |||| ||||    
T  54123275 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggtt 54123366  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  54123367 ttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacc 54123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 42977526 - 42977368
Alignment:
Q  115 taatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttg 214  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||        | |||||||||||||| ||| || |||||||||| |||| |||||     
T  42977526 taatatagtcatggatcttctagaaggccacctaaattttatattt--------atgtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 42977435  T
Q  215 tg-tctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    || || || ||||| ||| ||||||||||||||||||||||||| |||||||  |||||||| ||||    
T  42977434 tggtccctgtaatagagtcaaggatcatctgtcagtccacataagcgtgtttgaccaagtcagcacc 42977368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 10337898 - 10338057
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||| ||||| ||||        |||||||||||||||| ||| || |||||||||| |||| ||||    
T  10337898 tgtaatatagtcagggatcttctggaaggccacctaattttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggtt 10337989  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |   || || ||||||||| | ||||||||||||||| ||||||| ||||||| ||||||||| ||||    
T  10337990 ttgatccctgtaatatagtcagggatcatctgtcagttcacataagcgtgtttggccaagtcagcacc 10338057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 318
Target Start/End: Complemental strand, 16879494 - 16879290
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |   ||||||||  | || ||||    
T  16879494 tgtaatatagtcagggaccatctggaaggccacctaaatttcaaattttgttatttaggtg-ttttaatttcgtccctagatacctttttgtctttggtt 16879396  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagacc 312  Q
    |  ||| |||||||||||| | |||  ||||    ||||||| || |||||||| ||||| || ||||| ||||  |||||| ||||||||| |||| |     
T  16879395 ttggtccctataatatagtaagggaaaatctacaggtccacaaaagcgtgtttaaccaagccagcacccgccacgtcacacgccgttagccagcaaggcg 16879296  T
Q  313 tttttg 318  Q
    ||||||    
T  16879295 tttttg 16879290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 275
Target Start/End: Complemental strand, 48712187 - 48712033
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttc-tttttaggt 211  Q
    |||||| |||||| ||||| ||| ||||||||||||||||||| ||||        |||||||||||||||| ||| |  |||||||||| ||||||| |    
T  48712187 tgtaatctagtcagggatcttctggaaggccacctaaatttcatattt--------aggtgtttttaatttcgtccctatgtaccttttcatttttagtt 48712096  T
Q  212 ttgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtca 275  Q
    ||| ||| || ||||||||| | ||||||||||||||||||||||| ||||||| | |||||||    
T  48712095 ttg-gtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggtcaagtca 48712033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 48713245 - 48713351
Alignment:
Q  174 tttttaatttcatccatccgtaccttttc-tttttaggtttgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaag 272  Q
    ||||||||||| ||| || ||| |||||| ||||||| |||| ||| || ||||||||| | ||||||||||||||||||||||| ||||||| ||||||    
T  48713245 tttttaatttcgtccttctgtaacttttcgtttttagttttg-gtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaag 48713343  T
Q  273 tcaacacc 280  Q
    ||| ||||    
T  48713344 tcagcacc 48713351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 112 - 318
Target Start/End: Original strand, 5225329 - 5225535
Alignment:
Q  112 ttgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggt 211  Q
    |||||||||||||| ||||||||| |||| |||||||||||| ||||| ||||| | |||||||||||||||||||| |  |||||||||  |||| | |    
T  5225329 ttgtaatatagtcaaggatcatctggaagaccacctaaattttaaattgtgttacttaggtgtttttaatttcatccctatgtacctttttgtttttgat 5225428  T
Q  212 ttgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagac 311  Q
    ||  |||  | |||| |||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||   ||||| |||||||  | ||||||    
T  5225429 tttggtccttgtaatttagtcagggatcatctgtcagtccacataaacgtgtttagccaagtcagcacccgccatgtcacacatcgttagatatcaagac 5225528  T
Q  312 ctttttg 318  Q
     ||||||    
T  5225529 gtttttg 5225535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 273
Target Start/End: Complemental strand, 5225061 - 5224904
Alignment:
Q  115 taatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttg 214  Q
    ||||||||| | |||||||||  || |  ||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||  |||| |||||     
T  5225061 taatatagttagggatcatctgaaaagttacctaaatttcaaattttgttatta-ggtgtttttaatttcgtccctctgtaccttttagtttttggtttt 5224963  T
Q  215 tgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagt 273  Q
     ||| || ||||||||| | ||||||||||| ||||||||||| |||||||||||||||    
T  5224962 ggtccctgtaatatagtcatggatcatctgttagtccacataagcgtgtttagccaagt 5224904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 39102044 - 39101885
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||        |||||||||||||||| ||| || |||||||||| |||| ||||    
T  39102044 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggtt 39101953  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  |||  | ||||||||| | |||||||||||||||| |||||| ||||||| ||||||||| ||||    
T  39101952 ttagtccttgtaatatagtcagggatcatctgtcagtctacataagcgtgtttggccaagtcagcacc 39101885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 39103141 - 39103300
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| | ||| ||| ||||||||| ||||||||| ||||        |||||||||||||||| ||| || |||||||||| |||| ||||    
T  39103141 tgtaatatagtcaggaatcttctggaaggccacataaatttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggtt 39103232  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  39103233 ttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacc 39103300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 8874006 - 8874201
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||    ||| || |||||||||| |||| |       
T  8874006 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattttgttattcaggtgtttttaat----tccctctgtaccttttcgtttttg--- 8874098  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagacc 312  Q
       ||| || ||||||||| | ||||||||| ||||||||||||| ||||||| || || ||| ||||  ||||  ||| |  ||||||||| ||||||     
T  8874099 ---gtccctgtaatatagtcagggatcatctatcagtccacataagcgtgtttggcaaaatcagcacctgccacgtcactcaccgttagccagcaagaca 8874195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 273
Target Start/End: Complemental strand, 8872848 - 8872696
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| |||  |||||||||||||||||| ||||        |||||||||||||| | ||| ||||||||||||  |||| ||||    
T  8872848 tgtaatatagtcagggatcttctgaaaggccacctaaatttcatattt--------aggtgtttttaattccttccctccgtacctttttgtttttggtt 8872757  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagt 273  Q
    |  ||| || ||||||||| | ||||||||||||||||||| ||| ||||||| |||||||    
T  8872756 ttggtccctgtaatatagtcagggatcatctgtcagtccacgtaagcgtgtttggccaagt 8872696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 12251269 - 12251200
Alignment:
Q  119 atagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatcc 188  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||    
T  12251269 atagtcagggatcatctagaaggctgcctaaatttcaaattttgttatttatgtgtttttaatttcatcc 12251200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 11772456 - 11772556
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| | | |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  11772456 taaatttcaaattttgttatttaggtgtttttaatttcgtgcctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtc 11772555  T
Q  247 a 247  Q
    |    
T  11772556 a 11772556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 36619831 - 36619715
Alignment:
Q  164 tattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgt 263  Q
    |||| |||||||||||||||| ||| ||  ||||||||  |||| |||||  ||| || ||||||||| | ||||| ||||||||||||||||| |||||    
T  36619831 tatttaggtgtttttaatttcgtccctctttacctttttgtttttggttttggtccctgtaatatagtcagggatcgtctgtcagtccacataagcgtgt 36619732  T
Q  264 ttagccaagtcaacacc 280  Q
    || ||||||||| ||||    
T  36619731 ttggccaagtcagcacc 36619715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 38625019 - 38624919
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| |  |||||||||||    
T  38625019 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagagatcatctgtc 38624920  T
Q  247 a 247  Q
    |    
T  38624919 a 38624919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 17553267 - 17553321
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtacctttt 201  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  17553267 taaatttcaaattttgttatttaggtgtttttaatttcgtccatctgtacctttt 17553321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 36620960 - 36621115
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||        |||| |||||||||||||||| ||| || |||||||||| |||| | ||    
T  36620960 tgtaatatagtcagggatcttctggaaggccacctaaatttca--------tatttaggtgtttttaatttcgtccctctgtaccttttcgtttttgatt 36621051  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacc 280  Q
    |  ||| || ||||||||| | |||||    || |||| |||||| ||||||| ||||||||| ||||    
T  36621052 ttggtccctgtaatatagtcagggatc----gttagtctacataagcgtgtttggccaagtcagcacc 36621115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 28563689 - 28563551
Alignment:
Q  137 gaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaagg 236  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |  |||||||||| |||| |||||  ||| || ||||||||| ||||    
T  28563689 gaaggccacctaaatttcatattttgttatttaggtgtttttaattttatccctttgtaccttttcgtttttggttttggtccctgtaatatagtcaagg 28563590  T
Q  237 atcatctgtcagtccacataaacgtgtttagccaagtca 275  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  28563589 atcatctgtcagtccacataagcgtgtttggccaagtca 28563551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 40303596 - 40303496
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  40303596 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtaccttttcctttttggttttggtccctgtaatatagtcagggatcatctgtc 40303497  T
Q  247 a 247  Q
    |    
T  40303496 a 40303496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 45499608 - 45499508
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  45499608 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtaccttttcctttttggttttggtccctgtaatatagtcagggatcatctgtc 45499509  T
Q  247 a 247  Q
    |    
T  45499508 a 45499508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 309
Target Start/End: Complemental strand, 30791585 - 30791389
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    |||||||||||||  ||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||  | | ||  ||||||||  |||| | ||    
T  30791585 tgtaatatagtcagtgatcatctaaaaggccacttaaatttcaaattttgttatttaggtttttttaattttgttcctctatacctttttgtttttgatt 30791486  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaag 309  Q
    |   ||  ||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||| ||||| ||| | |||||| || |||||||||||    
T  30791485 ttgatccatataatatagttagggatcatcaatcagtccacataaacgtgtttagccaaatcagcacccgccatatcacacgccgctagccaacaag 30791389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 46245425 - 46245325
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  46245425 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtc 46245326  T
Q  247 a 247  Q
    |    
T  46245325 a 46245325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 30792660 - 30792741
Alignment:
Q  221 tataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagc 302  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||   |||  ||||||||||||||    
T  30792660 tataatatagtcatggatcatctctcagtccacataaacgtgtttagccaagtcagcacctgtcacgtcacacgtcgttagc 30792741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 9532453 - 9532541
Alignment:
Q  230 gttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagacctttttg 318  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||| || ||||| || |||||  ||||||||| |||||| ||||||    
T  9532453 gttagggatcatctgtcaatccacataaacgtgtttatccaagtcagcatccaccgcatcacacaccgttagccagcaagacgtttttg 9532541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 15135681 - 15135581
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| | |||||||||||||| ||  |  |||||||||| |||| |||||  |||  | ||||||||||||||||||| ||||    
T  15135681 taaatttcaaattttgttatttatgtgtttttaatttcgtcactttgtaccttttcgtttttggttttggtccttgtaatatagttaaggatcatttgtc 15135582  T
Q  247 a 247  Q
    |    
T  15135581 a 15135581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 31734511 - 31734595
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagt 231  Q
    ||||||||||||||||||||| ||||||||||||||||  |  || |||||||||| |||| |||||  |||||| |||||||||    
T  31734511 taaatttcaaattttgttatttaggtgtttttaatttcgcctctctgtaccttttcatttttggttttggtctctgtaatatagt 31734595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 37132134 - 37132038
Alignment:
Q  151 tttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttc-tttttaggtttgtgtctctataatatagttaaggatcatctgtca 247  Q
    ||||||||||||||||| |||||||||||||||| ||| || |||   |||| ||||||| |||| ||| || ||||||||||| |||||||||||||    
T  37132134 tttcaaattttgttatttaggtgtttttaatttcgtccctctgtaatatttcgtttttagttttg-gtccctgtaatatagttagggatcatctgtca 37132038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 14780722 - 14780626
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgt 245  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| || ||||||||| | |||  ||||  |||||  ||||| ||| |||||||||||||    
T  14780722 taaattttaaattttgttatttaggtgtttttaatttcgtccctctgtaccttttttgttt--gttttggtctcagtaatacagtcaaggatcatctgt 14780626  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 15230741 - 15230645
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgt 245  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| || ||||||||| | |||  ||||  |||||  ||||| ||| |||||||||||||    
T  15230741 taaattttaaattttgttatttaggtgtttttaatttcgtccctctgtaccttttttgttt--gttttggtctcagtaatacagtcaaggatcatctgt 15230645  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 19250884 - 19251089
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||| | ||||| ||| | ||| ||||||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| | ||    
T  19250884 tgtaatatagttagggatcttctggtaggtcacctaaatttcaaattttgttatttaggtgtttttaatttcgtccctttgtaccttttcgtttttgatt 19250983  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagacc 312  Q
    |  ||| || ||||||||| | |||||||||||||||||| |||| |||| ||| |||||||| ||||  ||||  || |||  |||||||| ||||||     
T  19250984 ttggtccctgtaatatagtcagggatcatctgtcagtccatataagcgtgattaaccaagtcagcacctgccacgtcatacgctgttagccagcaagacg 19251083  T
Q  313 tttttg 318  Q
    ||||||    
T  19251084 tttttg 19251089  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 309
Target Start/End: Complemental strand, 41668602 - 41668414
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| ||||        |||||||||||||||| ||| || |||||||||| |||| ||||    
T  41668602 tgtaatatagtcagggatcttctggaaggccacctaaatttcatattt--------aggtgtttttaatttcgtccctctgtaccttttcgtttttggtt 41668511  T
Q  213 tgtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaag 309  Q
    |  ||| || ||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||  ||||| ||| |  ||||||||| ||||    
T  41668510 ttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacatcactcaccgttagccagcaag 41668414  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 281
Target Start/End: Complemental strand, 19249654 - 19249487
Alignment:
Q  114 gtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggttt 213  Q
    |||||||||||| |||| || |  ||||||||||||||||||||||||||| || |||||||||||||||| ||| |  |||||||||| ||||   | |    
T  19249654 gtaatatagtcagggataatttgaaaggccacctaaatttcaaattttgttgtttaggtgtttttaatttcgtccctatgtaccttttcattttttatgt 19249555  T
Q  214 gtgtctctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacaccc 281  Q
      |||  | ||||||||| | ||||||| ||||| |||||| || | || |||||||||||| |||||    
T  19249554 tggtccttgtaatatagtcagggatcatatgtcattccacacaagcatgcttagccaagtcagcaccc 19249487  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 318
Target Start/End: Complemental strand, 41925349 - 41925251
Alignment:
Q  220 ctataatatagttaaggatcatctgtcagtccacataaacgtgtttagccaagtcaacacccaccacaccacacgtcgttagccaacaagacctttttg 318  Q
    |||||||||||||| ||||||||||||||| |||||||  ||||| ||| ||  | |||||| ||||| |||||| ||| | |||||||||| ||||||    
T  41925349 ctataatatagttagggatcatctgtcagttcacataagagtgttcagctaaaccgacacccgccacatcacacgccgtaaaccaacaagacgtttttg 41925251  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 19250776 - 19250907
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttt-taatttcatccatccgtaccttttctttttaggt 211  Q
    ||||||||||||| ||||| | |  ||||| ||||| |||||||||| ||||||| ||||||||| ||||||| ||| ||  ||||||||| |||| |||    
T  19250776 tgtaatatagtcagggatctt-tgtaaggcaacctacatttcaaattgtgttatttaggtgttttttaatttcctccctctataccttttcgtttttggt 19250874  T
Q  212 ttgtgtctctataatatagttaaggatcatctg 244  Q
    ||  |||  | ||||||||||| ||||| ||||    
T  19250875 tttggtccatgtaatatagttagggatcttctg 19250907  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 31657259 - 31657159
Alignment:
Q  113 tgtaatatagtcatggatcatctagaaggccacctaaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtt 212  Q
    ||||||||||||| ||||| ||| |||||||||||| |||||| ||||||||||| |||||||||||||||  ||| || |||||||||| |||| ||||    
T  31657259 tgtaatatagtcagggatcttctggaaggccacctacatttcatattttgttatttaggtgtttttaattttgtccctctgtaccttttcatttttggtt 31657160  T
Q  213 t 213  Q
    |    
T  31657159 t 31657159  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 40499008 - 40499108
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  40499008 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtc 40499107  T
Q  247 a 247  Q
    |    
T  40499108 a 40499108  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 48568286 - 48568386
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  48568286 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtc 48568385  T
Q  247 a 247  Q
    |    
T  48568386 a 48568386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 31796590 - 31796690
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| || ||||||||||||| ||| |  |||||||||| |||| |||||  ||| || ||||||||| | ||||||||||||    
T  31796590 taaatttcaaattttgttatttagttgtttttaatttcgtccctatgtaccttttcctttttggttttggtccctgtaatatagtcagggatcatctgtc 31796689  T
Q  247 a 247  Q
    |    
T  31796690 a 31796690  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 41083027 - 41083127
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttcatccatccgtaccttttctttttaggtttgtgtctctataatatagttaaggatcatctgtc 246  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||  |||| |||||  ||| || ||||||||| | ||||||||||||    
T  41083027 taaatttcaaattttgttatttaggtgtttttaatttcgtccctatgtacctttttctttttggttttggtccctgtaatatagtcagggatcatctgtc 41083126  T
Q  247 a 247  Q
    |    
T  41083127 a 41083127  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 29748179 - 29748142
Alignment:
Q  147 taaatttcaaattttgttattaaggtgtttttaatttc 184  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  29748179 taaatttcaaattttgtcatttaggtgtttttaatttc 29748142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 31658378 - 31658414
Alignment:
Q  117 atatagtcatggatcatctagaaggccacctaaattt 153  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  31658378 atatagtcatggatcttctataaggccacctaaattt 31658414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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