View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_72 (Length: 329)
Name: NF19103_low_72
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 43018791 - 43018460
Alignment:
| Q |
1 |
ttgtccacgtagaaaaattggttcatattgtgtaattctctacatggaaatttgttgacatagtataaattttgtttcttaggctttctggtgaataa-- |
98 |
Q |
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| T |
43018791 |
ttgtccacgtagaaaaattggttcatattgtgtaattctctacatggaaatttgttgacatagtataagttttgtttcttaggctttctggtgaataacc |
43018692 |
T |
|
| Q |
99 |
---------gcctctaaatgtagaaattattggttcttaaaatataattatttcaaccttccgtcggccttcaaacttagaagaattatatgcacaaatt |
189 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43018691 |
aaagataatgcctctaaatgtagaaattattggttcttaaa-tataattatttcaaccttccgtcggccttcaaacttagaagaattatatgcacaaatt |
43018593 |
T |
|
| Q |
190 |
agtgagggaaatccacatgcattcttaatgcatgttagttatagatatttttcgtattttcccctaatattagattttattaccaatctacctactcgat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
43018592 |
agtgagggaaatccacatgcattcttaatgcatgttagttatagatatttttcgtattttcccctaatataagattttattaccaatctacctacttgat |
43018493 |
T |
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| Q |
290 |
caaaaattgatcgaattttagacctgatgatgt |
322 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43018492 |
caaaaattgatcgaattttagacctgatgatgt |
43018460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 46532222 - 46532411
Alignment:
| Q |
4 |
tccacgtagaaaaattggttcatattgtgtaattctctacatggaaatttgttgacatagtataaattttgtttcttaggctttctggtgaataa----- |
98 |
Q |
| |
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|||| ||||| |||||||||||| |||| ||||||||| ||||||||||| |||||| ||| ||| ||||||||||||||||||| |||| ||| |
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| T |
46532222 |
tccaagtagagaaattggttcat-ttgtataattctctgcatggaaattt-ttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaa |
46532319 |
T |
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| Q |
99 |
------gcctctaaatgtagaaattattggttcttaaaatataattatttcaaccttccgtcggccttcaaacttagaagaattatatgcaca |
185 |
Q |
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| |||| |||||||||||||||||||||| |||| |||||||||||| |||| || || |||||||||||||||| ||| |||||| |
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| T |
46532320 |
aataatggctcttaatgtagaaattattggttctt-aaatttaattatttcaatcttctctcagcattcaaacttagaagaagtatgtgcaca |
46532411 |
T |
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