View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_73 (Length: 326)
Name: NF19103_low_73
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 58 - 316
Target Start/End: Original strand, 3650867 - 3651129
Alignment:
| Q |
58 |
gactttagttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtga |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3650867 |
gactttagttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtga |
3650966 |
T |
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| Q |
158 |
gatatagtcatggatttgcttttgatgat----gtgggtatattgtgagagtagttttaatgttatataatttttgctggttgtcattagacaatgatta |
253 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
3650967 |
gatatagttatggatttgcttttgatgatgtgggtgggtatattgtgagagtagttttaatgttatatactttttgctggttgtcattagacaacgatta |
3651066 |
T |
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| Q |
254 |
tgattttatctacggttttggagtttctacattatagtcttatattgtgattgtgttcctttg |
316 |
Q |
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|||||||||||||| ||||||| ||||||||||||| ||||| ||| |||||||||||||||| |
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| T |
3651067 |
tgattttatctacgattttggaatttctacattatattcttacattatgattgtgttcctttg |
3651129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 4466851 - 4466895
Alignment:
| Q |
121 |
ttcttttctcttgtactcttgtcttagaatgttgtgagatatagt |
165 |
Q |
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| T |
4466851 |
ttcttttctcttttactcttgtcttagaatgttgtgagatgtagt |
4466895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 3272483 - 3272565
Alignment:
| Q |
73 |
ttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtga |
157 |
Q |
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| T |
3272483 |
ttacaagatgcatcagtcaaaaatactttaaacttgtaattgattttctt-ttttctcttatact-ttgtcttaaaatgttgtga |
3272565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 52732973 - 52733077
Alignment:
| Q |
59 |
actttagttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgac---tttcttcttttctcttgtactcttgtcttagaatgttgt |
155 |
Q |
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|||||| ||||| ||| ||||||||||| | |||||||||||||| ||| |||| || ||| ||||||| ||| ||| ||||||||||| |||||| |
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| T |
52732973 |
actttatttctttgttataagatgcaccaataaaaaacactttaagtttgtatattacctttttattcttttatctaatacccttgtcttagattgttgt |
52733072 |
T |
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| Q |
156 |
gagat |
160 |
Q |
| |
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||||| |
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| T |
52733073 |
gagat |
52733077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 5448779 - 5448708
Alignment:
| Q |
240 |
ttagacaatgattatgattttatctacggttttggagtttctacattatagtcttata-ttgtgattgtgtt |
310 |
Q |
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|||||||| | | ||| |||| ||||||||||||||||||| |||||||| |||| || ||||||||||||| |
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| T |
5448779 |
ttagacaacggtcatggttttttctacggttttggagtttccacattatattcttgtatttgtgattgtgtt |
5448708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 31796247 - 31796153
Alignment:
| Q |
58 |
gactttagttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtg |
156 |
Q |
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||||||| ||||| ||| |||||||| || | |||||||||||||||||| || || |||| ||||||||| ||| ||| ||||||||||||||| |
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| T |
31796247 |
gactttatttctttgttataagatgcaacaattaaaaacactttaagcttgtatttg----tctttttttctcttatacccttttcttagaatgttgtg |
31796153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 25078284 - 25078328
Alignment:
| Q |
116 |
ctttcttcttttctcttgtactcttgtcttagaatgttgtgagat |
160 |
Q |
| |
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|||| ||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
25078284 |
cttttttcttctctcttatactcttgtcttagagtgttgtgagat |
25078328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 25079148 - 25079196
Alignment:
| Q |
60 |
ctttagttcttctttacaagatgcaccagtcaaaaacactttaagcttg |
108 |
Q |
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||||||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
25079148 |
ctttagttcttagttacaagatgcatcgatcaaaaacactttaagcttg |
25079196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 2614995 - 2614938
Alignment:
| Q |
92 |
aaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaa |
149 |
Q |
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|||||| ||||| |||| || ||||||| |||||||||||| ||||||| |||||||| |
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| T |
2614995 |
aaaacattttaaacttgtatctgacttttttcttttctcttatactcttttcttagaa |
2614938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 32958169 - 32958267
Alignment:
| Q |
66 |
ttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagt |
165 |
Q |
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|||||| |||||| |||||| |||| |||||||||||||||| ||| ||||| |||||||||||| | || ||| ||||| || ||||||||| |||| |
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| T |
32958169 |
ttcttcgttacaatatgcacaagtcgaaaacactttaagcttctatacaacttt-ttcttttctcttattctattgccttag-attttgtgagatgtagt |
32958266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 3289694 - 3289746
Alignment:
| Q |
113 |
tgactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagt |
165 |
Q |
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||||||| ||||||||||||| ||||| ||||||| ||||||||||| |||| |
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| T |
3289694 |
tgacttttttcttttctcttgcgctcttttcttagagtgttgtgagatgtagt |
3289746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 46815435 - 46815479
Alignment:
| Q |
113 |
tgactttcttcttttctcttgtactcttgtcttagaatgttgtga |
157 |
Q |
| |
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||||||||||||||||| |||||||||| | ||||| |||||||| |
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| T |
46815435 |
tgactttcttcttttctattgtactcttatgttagagtgttgtga |
46815479 |
T |
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