View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_low_74 (Length: 321)
Name: NF19103_low_74
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_74 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 14175839 - 14175533
Alignment:
| Q |
1 |
gatcaattattaccttcaagttgaaggtggagaaaaggtgaagttatggagtgaatgttttgctcatcaatggtatcctattgatgatatcattcagctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175839 |
gatcaattattaccttcaagttgaaggtgaagaaaaggtgaagttatggagtgaatgttttgctcatcaatggtatcctattgatgatatcattcagctt |
14175740 |
T |
|
| Q |
101 |
ttaccagaaaaaattgggaatcaatacaggtgagaaaaattctaaatttagttcaacaaaatgataaactagatgctgtcagtgtgaccaatagagtgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14175739 |
ttaccagaaaaaattgggaatcaatacaggtgaggaaaattataaatttagttcaacaaaatgataaactagatgctgtcaatgtgaccaatagagtgca |
14175640 |
T |
|
| Q |
201 |
tcacatcctttgattttgcggagaatcacaatcaaatgtggttggcacaatctcaatggtgttcaccgtcacggacattttttagaaatagttgatctga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
14175639 |
tcacatcctttgattttgcggagaatcacaatcaaatgtggttggcacaatctcaacggtgttcgcggtcacggacattttttagaaatagttgatctga |
14175540 |
T |
|
| Q |
301 |
tgctagt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
14175539 |
tgctagt |
14175533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 14172386 - 14172249
Alignment:
| Q |
3 |
tcaattattaccttcaagttgaaggtggagaaaaggtgaagttatggagtgaatgttttgctcatcaatggtatcctattgatgatatcattcagctttt |
102 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14172386 |
tcaattattaccttcaagtggatggtggagaaaaggttaagttgtggagtgaatgttttgctcatccatggtatcctattgatgatatcattcagctttt |
14172287 |
T |
|
| Q |
103 |
accagaaaaaattgggaatcaatacaggtgagaaaaat |
140 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14172286 |
accagaaaaaattgggactcaatacaggtgagcaaaat |
14172249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 14179846 - 14179709
Alignment:
| Q |
3 |
tcaattattaccttcaagttgaaggtggagaaaaggtgaagttatggagtgaatgttttgctcatcaatggtatcctattgatgatatcattcagctttt |
102 |
Q |
| |
|
||||||||| |||| ||| || |||||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||| |||||||||||| ||| | |
|
|
| T |
14179846 |
tcaattatttacttcgagtagatggtggagaaacggtgaagttgtggagtgaaaattttgttcatccatggtatcctatggatgatatcatttctcttct |
14179747 |
T |
|
| Q |
103 |
accagaaaaaattgggaatcaatacaggtgagaaaaat |
140 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
14179746 |
accagaaaatattgggacccaatacaggtgagaaaaat |
14179709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University