View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_76 (Length: 321)
Name: NF19103_low_76
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 25028110 - 25027805
Alignment:
| Q |
1 |
actcataaatacatctaaatcttcatcatacaaatatgtgaaaaaccgtatcccttaataccgttttacagtattatgcttcaaatatatgttttaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25028110 |
actcataaatacatctaaatcttcatcatacaaatatgtgaaaaaccgtatcccttaataccgttttacagtattatgcttcaaatatatgttttaaaac |
25028011 |
T |
|
| Q |
101 |
tatttcccttnnnnnnnnttaaaaccatgtttaatccaacgatatacttgggaattggcagttgaaactaattccgcaaatggaaacataaaacaggtcg |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25028010 |
tatttcccttaaaaaaaattaaaaccatgtttaatccaacgatatacttgggaattggcagttgaaactaattccgcaaatggaaacataaaacaggtcg |
25027911 |
T |
|
| Q |
201 |
tgtatatcaaaattcatcattcgacaattcaaaatcttttatttcacctcattgcttatcaaaaatcaaatttaattctatatgcaaagattttcatagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027910 |
tgtatatcaaaattcatcattcgacaattcaaaatcttttatttcagctcattgcttatcaaaaatcaaatttaattctatatgcaaagattttcatagt |
25027811 |
T |
|
| Q |
301 |
taccat |
306 |
Q |
| |
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|||||| |
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| T |
25027810 |
taccat |
25027805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 25018396 - 25018309
Alignment:
| Q |
211 |
aattcatcattcgacaattcaaaatcttttatttcacctcattgcttatcaaaaatcaaatttaattctatatgcaaagattttcatag |
299 |
Q |
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|||||||||||| || ||||||||| |||||||| |||||||| | ||||| | ||||||||||| |||||||||| |||||||| |
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| T |
25018396 |
aattcatcattccacggttcaaaatcctttatttctgatcattgctcaacaaaa-taaaatttaattccatatgcaaagtgtttcatag |
25018309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 304
Target Start/End: Complemental strand, 26104982 - 26104821
Alignment:
| Q |
142 |
atatacttgggaattggcagttgaaactaattccgcaaatggaaacataaaacaggtcgtgtatatcaaaattcatcattcgacaattcaaaatctttta |
241 |
Q |
| |
|
||||| |||| |||| | |||||||| | |||| |||||||||||||||| ||||| |||||| | |||| ||||||| ||||||| |||| ||||| |
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| T |
26104982 |
atatatttggcaattaggagttgaaattgattcagcaaatggaaacataatacaggctgtgtatcctagaattgatcattctacaattccaaatatttta |
26104883 |
T |
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| Q |
242 |
tttcacctcattgcttatcaaaaatcaaatttaattctatatgcaaagattttcatagttacc |
304 |
Q |
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||||| |||| |||||||| ||||| |||||||||||||||| |||||| ||||||||||||| |
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| T |
26104882 |
tttcaactcactgcttatc-aaaattaaatttaattctatattcaaagagtttcatagttacc |
26104821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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