View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_77 (Length: 320)
Name: NF19103_low_77
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2710222 - 2710530
Alignment:
| Q |
1 |
ttgggaggacactataaatgactatttactggaccaggtttgagtgcagtcatataggtcagtgattccatacaataaggaagcatgtggccatctgatc |
100 |
Q |
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| T |
2710222 |
ttgggaggacactataaatgactatttaccggaccaggtttgagtgcagtcata--ggtcagtgattgcatacaataaggaagcatgtggccatctgatc |
2710319 |
T |
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| Q |
101 |
ctgctcgaacagtctagattttaacatcacaattttata--aaacaaaaatcgtaaactatcttaaaatgtgagtcgtctgatcaaaatctaattgttca |
198 |
Q |
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| T |
2710320 |
ctgctcgaacagtctagattttaacatcacaattttatattaaataaaaatcgtaaactatcttaaaatgtgagtcgtctgatcaaaatctaattgttct |
2710419 |
T |
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| Q |
199 |
aatctactgactgcacttgcatgtgcttctaatccaattccctatttacttctcatcaacttttgcaggtgcaagttggaataggacccacatcattatt |
298 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2710420 |
aatctactgactgcacctgcatgtgcttctaatccaattccctatttacttctcatcaacttttgcaggtgcaagttggaataggacccacatcattatt |
2710519 |
T |
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| Q |
299 |
ttctcacctat |
309 |
Q |
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||| ||||||| |
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| T |
2710520 |
ttcacacctat |
2710530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 2715292 - 2715361
Alignment:
| Q |
240 |
ctatttacttctcatcaacttttgcaggtgcaagttggaataggacccacatcattattttctcacctat |
309 |
Q |
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||||||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
2715292 |
ctatttacttctcattaaattttgttggttgaagttggaataggacccatgtcattattttcacacctat |
2715361 |
T |
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