View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_80 (Length: 313)

Name: NF19103_low_80
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_80
NF19103_low_80
[»] chr1 (1 HSPs)
chr1 (1-294)||(40000171-40000465)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 40000171 - 40000465
Alignment:
Q  1 ataaactaagagatgaa-gttgttttcagccgcgacgcattctgttagtcatagaataatgtgtatctttctgttgtatctcatttgatttagtcataag 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40000171 ataaactaagagatgaaagttgttttcagccgcgacgcattctgttagtcatagaataatgtgtatctttctgttgtatctcatttgatttagtcataag 40000270  T
Q  100 tctggttctggtacagattgtattatatgcactttgttcaatgaaattactcacttctatcaagttcctagcgtttcggacattcggatgccgaaaataa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40000271 tctggttctggtacagattgtattatatgcactttgttcaatgaaattactcacttctatcaatttcctagcgtttcggacattcggatgccgaaaataa 40000370  T
Q  200 agaacctgctgcatttatttctgttaaaggatattgtcacaggaagcttggccatcctagcagatagctatttgatcaaatgcaaagcagctgca 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40000371 agaacctgctgcatttatttctgttaaaggatattgtcacaggaagcttggccatcctagcagatagctatttgatcaaatgcaaagcagctgca 40000465  T

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