View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_low_84 (Length: 310)
Name: NF19103_low_84
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 48904249 - 48904526
Alignment:
| Q |
18 |
atgaatagcttaaggaatcaaacaagacatgattcttgcttagaacaaaatgtttacttatattaactct---aacatttttgtttgtgtcatcttctta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48904249 |
atgaatagcttaaggaatcaaacaagacatgattcttgcttagaacaaaatgtttacttatattaactcttttaacatttttgtttgtgtcatcttctta |
48904348 |
T |
|
| Q |
115 |
agattgtagattgtcccctgacataaacaccatttagctccttaaaaatcttagcaaggaaactcaatggaataaaatctggtgatgggaaaaaaggttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904349 |
agattgtagattgtcccctgacataaacaccatttagctccttaaaaatcttagcaagaaaactcaatggaataaaatctggtgatgggaaaaaaggttt |
48904448 |
T |
|
| Q |
215 |
accacaaataaattggaaataaatcagcagcaccaacggtaatcagaaatcccttatttaatacataaagagtgttat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48904449 |
accacaaataaattggaaataaatcagcagcaccaacggtaatcagaaatcccttatttaatacataaatagtgttat |
48904526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University