View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_low_85 (Length: 305)
Name: NF19103_low_85
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 25483439 - 25483154
Alignment:
| Q |
1 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccaactggtctccatttctcaaggaaaactgcgaacggtatcttgctaagaagaaagaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25483439 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaaga |
25483340 |
T |
|
| Q |
101 |
ggacagaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacggctacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25483339 |
ggacagaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactaca |
25483240 |
T |
|
| Q |
201 |
aaaccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttctttttaactttcaacactattaaaatattctcaccct |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
25483239 |
aaaccatttcccaa------cccaaatgaaggtaagtttgtgtcctgtctctttctttttaactttcaacagtattaaaatatcctcaccct |
25483154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 25860596 - 25860881
Alignment:
| Q |
1 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccaactggtctccatttctcaaggaaaactgcgaacggtatcttgctaagaagaaagaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25860596 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaaga |
25860695 |
T |
|
| Q |
101 |
ggacagaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacggctacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25860696 |
ggacagaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactaca |
25860795 |
T |
|
| Q |
201 |
aaaccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttctttttaactttcaacactattaaaatattctcaccct |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
25860796 |
aaaccatttcccaa------cccaaatgaaggtaagtttgtgtcctgtctctttctttttaactttcaacagtattaaaatatcctcaccct |
25860881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 25603605 - 25603726
Alignment:
| Q |
1 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccaactggtctccatttctcaaggaaaactgcgaacggtatcttgctaagaagaaagaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25603605 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccgactggtctccattgctgaaggaacactgcgaacggtatcttgctaagaagaaagaaga |
25603704 |
T |
|
| Q |
101 |
ggacagaaagtatttatctgaa |
122 |
Q |
| |
|
|||| | |||||||| |||||| |
|
|
| T |
25603705 |
ggaccgtaagtatttttctgaa |
25603726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25884437 - 25884567
Alignment:
| Q |
1 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccaactggtctccatttctcaaggaaaactgcgaacggtatcttgctaagaagaaagaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
25884437 |
ctcctcctgtgacgaccaaagttgctaagatggaatataccgactggtctccattgctgaaggaaaactgcgaaaagtatcttgctaagcagaaagaaga |
25884536 |
T |
|
| Q |
101 |
ggacagaaagtatttatctgaaattcttcgt |
131 |
Q |
| |
|
|||| | |||||||| |||||| |||||||| |
|
|
| T |
25884537 |
ggaccgtaagtatttttctgaatttcttcgt |
25884567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 25886397 - 25886509
Alignment:
| Q |
19 |
aagttgctaagatggaatataccaactggtctccatttctcaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttatc |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
|
|
| T |
25886397 |
aagttgctaagatggaatataccgactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggaccgtaagtatttttc |
25886496 |
T |
|
| Q |
119 |
tgaaattcttcgt |
131 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
25886497 |
tgaatttcttcgt |
25886509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 25603787 - 25603878
Alignment:
| Q |
204 |
ccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttcttttt---aactttcaacactattaaaatattctcaccct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
25603787 |
ccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttctttttaacaactttcaacactattaaaatatcctcaccct |
25603878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 25885862 - 25885953
Alignment:
| Q |
204 |
ccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttcttttt---aactttcaacactattaaaatattctcaccct |
292 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
25885862 |
ccatttcccaagctgttgccaaatgaaggtaagtttgtgccctgtctctttctttttaacaactttcaacactattaaaatatcctcaccct |
25885953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 25604300 - 25604337
Alignment:
| Q |
19 |
aagttgctaagatggaatataccaactggtctccattt |
56 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25604300 |
aagttgctaagatggaatataccgactggtctccattt |
25604337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University