View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_87 (Length: 300)

Name: NF19103_low_87
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_87
NF19103_low_87
[»] chr3 (2 HSPs)
chr3 (14-272)||(53730976-53731235)
chr3 (14-90)||(53726677-53726753)
[»] chr4 (3 HSPs)
chr4 (21-189)||(14059146-14059314)
chr4 (21-92)||(23544779-23544850)
chr4 (188-262)||(14059395-14059470)
[»] chr8 (5 HSPs)
chr8 (36-194)||(5659793-5659951)
chr8 (21-137)||(38643563-38643677)
chr8 (21-90)||(8263578-8263647)
chr8 (37-143)||(21418939-21419040)
chr8 (165-267)||(21418831-21418934)
[»] scaffold0427 (2 HSPs)
scaffold0427 (58-257)||(5896-6096)
scaffold0427 (188-267)||(6108-6188)
[»] chr2 (4 HSPs)
chr2 (21-194)||(7504838-7505010)
chr2 (123-194)||(26973220-26973291)
chr2 (21-98)||(26973292-26973369)
chr2 (17-90)||(26968772-26968845)
[»] chr5 (2 HSPs)
chr5 (37-106)||(16087968-16088037)
chr5 (21-66)||(3627788-3627833)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 53731235 - 53730976
Alignment:
Q  14 ttcttcaaagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcctttataa 113  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53731235 ttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaacaatcttggaatttatcctttataa 53731136  T
Q  114 ttgtgaccgcaagttaaggtttgggtgattggaaaactagtgcagaccttctacaaggtacacaactttcattcaacaattgatttcgaaaataaattgc 213  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  53731135 ttgtgaccgcaagttaatgtttgggtgattggaaaattagtacagaccttctacaaggtacacaattttcattcaacaattgatttccaaaataaattgc 53731036  T
Q  214 cgtaacttctattgttatatattggt-ttttgaattagaaacattgctattcatttgctt 272  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||    
T  53731035 cgtaacttctattgttatatattggttttttgaattagaaacattgatgttcattcgctt 53730976  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 53726753 - 53726677
Alignment:
Q  14 ttcttcaaagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaaca 90  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53726753 ttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaaca 53726677  T

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Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 14059146 - 14059314
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcctttataattgtgac 120  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14059146 aagttgcggttgctgcgttattacttaaagttgcggtgttgtggttgctgtttacacatcaggtacaacaatcttggaatttatcctttataactgtgac 14059245  T
Q  121 cgcaagttaaggtttgggtgattggaaaactagtgcagaccttctacaaggtacacaactttcattcaa 189  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  14059246 cgcaagttaaggtttgggtgattggaaaattagtgcagaccttctacaaggtacagaactttcattcaa 14059314  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 23544779 - 23544850
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaat 92  Q
    ||||| ||||||||  |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  23544779 aagttgcggttgctgcgttattacctaaagttgcggtgttgcggttgatgtttacacataaggtacaacaat 23544850  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 14059395 - 14059470
Alignment:
Q  188 aacaattgatttcgaaaataaattgccgtaacttctattgttatatattg-gtttttgaattagaaacattgctat 262  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||   ||||||| |||||||||| ||||    
T  14059395 aacaattgatttagaaaataaattgccgtaacttatattgttatatattgaccttttgaactagaaacatttctat 14059470  T

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Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 5659793 - 5659951
Alignment:
Q  36 tgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcctttataattgtgaccgcaagttaaggttt 135  Q
    |||||||| || |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5659793 tgttattatttgaagttgcggtgttgcggttgctgtttacgcatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggttt 5659892  T
Q  136 gggtgattggaaaactagtgcagaccttctacaaggtacacaactttcattcaacaatt 194  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||    
T  5659893 gggtgattggaaaattagtacagaccttctacaaggtacacgactttcattcaataatt 5659951  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 38643677 - 38643563
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcc-tttataattgtga 119  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||  ||||| |||   |||||||||||||||||||||||| |||| || |||||    
T  38643677 aagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgcggtttacgcat---gtacaacaatcttggaatttatccttttaaaactgtga 38643581  T
Q  120 ccgcaagttaaggtttgg 137  Q
    |||||||||||| |||||    
T  38643580 ccgcaagttaagatttgg 38643563  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 8263578 - 8263647
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaaca 90  Q
    ||||| ||||||||  ||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||    
T  8263578 aagttgcggttgctgcgttattacttaaagttgcgatgttgcggttgttgtttacacatcaggtacaaca 8263647  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 21419040 - 21418939
Alignment:
Q  37 gttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcctttataattgtgaccgcaagttaaggtttg 136  Q
    ||||||| ||||||||| ||||||||||||||| |||||||     || ||||||||||| |||||||   ||| || ||||||||||| ||||| ||||    
T  21419040 gttattatttaaagttgtggtgttgcggttgctgtttacac-----gtgcaacaatcttgaaatttattgattaaaactgtgaccgcaaattaagatttg 21418946  T
Q  137 ggtgatt 143  Q
    |||||||    
T  21418945 ggtgatt 21418939  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 21418934 - 21418831
Alignment:
Q  165 tacaaggtacacaactttcattcaacaattgatttcgaaaataaattgccgtaacttctattgttatata-ttggtttttgaattagaaacattgctatt 263  Q
    |||||||||||||| ||||||| ||||||| |||   |    ||||||||| ||||| |||||||||||| |||  ||||||| ||||||||||||||||    
T  21418934 tacaaggtacacaagtttcatttaacaattaattcacaggccaaattgccgaaacttatattgttatataattgccttttgaaatagaaacattgctatt 21418835  T
Q  264 catt 267  Q
    ||||    
T  21418834 catt 21418831  T

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Target: scaffold0427 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 5896 - 6096
Alignment:
Q  58 gttgcggttgctatttacacataaggtacaacaatcttggaatttatcctttataattgtgaccgcaagttaaggtttgggtgattggaaaactagtgca 157  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  5896 gttgcggttgctgtttacacattaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggtttgggtgattggaaaattagtgca 5995  T
Q  158 gaccttctacaaggtacacaactttcattcaacaattgatttcgaaaataaattgccgt-aacttctat-tgttatatattggt-ttttgaattagaaac 254  Q
    |||||||||| ||||||||| ||||||||||| |||| |||  || || | |||||||| ||||||||| ||||||||||| || ||||||||||||| |    
T  5996 gaccttctacgaggtacacagctttcattcaataattaatt--gacaaaatattgccgtgaacttctatctgttatatatttgtgttttgaattagaatc 6093  T
Q  255 att 257  Q
    |||    
T  6094 att 6096  T

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Target: scaffold0427; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 6108 - 6188
Alignment:
Q  188 aacaattgatttcgaaaataaattgccgtaacttctattgttatata-ttggtttttgaattagaaacattgctattcatt 267  Q
    ||||||||||||| |||||||| ||||| ||||| ||||||||| || |||  ||||||| ||||||||||||||||||||    
T  6108 aacaattgatttccaaaataaagtgccgcaacttatattgttatttatttgccttttgaaatagaaacattgctattcatt 6188  T

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Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 7505010 - 7504838
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcctttataattgtgac 120  Q
    ||||| ||||||||  ||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  7505010 aagttgcggttgctgcgttattacttaaagttgcggtgttatggttgctgtttacacatcaggtacaacaatcttagaatttatcctttataaatgtgac 7504911  T
Q  121 cgcaagttaaggtttgggtgattggaaaactagtgcagaccttctacaaggtacacaactttcattcaacaatt 194  Q
    ||||| || ||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||    
T  7504910 cgcaaatttaggtttgagtgattggaaaattagtgca-accttctacaaggtacacaacttccattcaaaaatt 7504838  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 26973291 - 26973220
Alignment:
Q  123 caagttaaggtttgggtgattggaaaactagtgcagaccttctacaaggtacacaactttcattcaacaatt 194  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  26973291 caagttaaggtttggctgattggaaaattagtgcagaccttctacaaggtacacaactttcattcaataatt 26973220  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 26973369 - 26973292
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttgga 98  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  26973369 aagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgctgtttacacatcaggtacaagaatcttgga 26973292  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 26968845 - 26968772
Alignment:
Q  17 ttcaaagttacggttgctatgttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaaca 90  Q
    ||||||||| ||||||||   || ||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  26968845 ttcaaagttgcggttgctgcattgttacttaaagttgcggtgttgcggttgctgtttactcatcaggtacaaca 26968772  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 16088037 - 16087968
Alignment:
Q  37 gttattacttaaagttgcggtgttgcggttgctatttacacataaggtacaacaatcttggaatttatcc 106  Q
    ||||||| || ||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||    
T  16088037 gttattatttgaagttgcggtgttgcggttactgtttacgcatcaggtacaacaatcttggaatttatcc 16087968  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 3627833 - 3627788
Alignment:
Q  21 aagttacggttgctatgttattacttaaagttgcggtgttgcggtt 66  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  3627833 aagttgcggttgctacgttattatttaaagttgcggtgttgcggtt 3627788  T

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