View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_89 (Length: 296)
Name: NF19103_low_89
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_89 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 8716996 - 8717215
Alignment:
| Q |
24 |
ggttggtcgaattaagctgttgtcatggtcctggtttatttatagggcgggtagaaacaagaactttgtcttctcaaataggtggacgaatccacttcat |
123 |
Q |
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| T |
8716996 |
ggttggtcgaattaagctgttgtcatggtcttggtttatttatagggcgggtagaaacaagaactttgtcttctcaaataggtggacaaatccacttcat |
8717095 |
T |
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| Q |
124 |
gttttcagatgcttttgaagcaagtaaattatttccttgtgattgatttgttcagtttgttgctgacatcggatgtgaagtttttaccgtgta---aggt |
220 |
Q |
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| T |
8717096 |
gttttacgatgcttttgaagcaagtaaattatttccttgtggttgatttgttcagtttgttgatgacttcggatgtgaagtttttaccgtgtaaggaggt |
8717195 |
T |
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| Q |
221 |
ttgaattgcattgcttcagg |
240 |
Q |
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| T |
8717196 |
ttgaattgcattgcttcagg |
8717215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 8735856 - 8736016
Alignment:
| Q |
24 |
ggttggtcgaattaagctgttgtcatggtcctggtttatttatagggcgggtagaaacaagaactttgtcttctcaaataggtggacgaatccacttcat |
123 |
Q |
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| T |
8735856 |
ggttgatcgaattaagctgttgtcgtggtcttggtttatttatagggagagtagaaacaagaactttatattctcaaataggtgcacgaatccacttcat |
8735955 |
T |
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| Q |
124 |
gttttcagatgcttttgaagcaagtaaattatttccttgtgattgatttgttcagtttgttg |
185 |
Q |
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| T |
8735956 |
gttttacgatgcttttgaagcaagt-aattgtttctgtgttgttgatttgttcagtttgttg |
8736016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 8736087 - 8736146
Alignment:
| Q |
217 |
aggtttgaattgcattgcttcaggtttcttggtggagacaatgtgaggtttcagttctgt |
276 |
Q |
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| T |
8736087 |
aggtttgaattgcattgcttcaggttcattggtggggacgatgtaaggtttcggttctgt |
8736146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 71984 - 72059
Alignment:
| Q |
42 |
gttgtcatggtcctggtttatttatagggcgggtagaaacaagaactttgtcttctcaaataggtggacgaatcca |
117 |
Q |
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| T |
71984 |
gttgtcatggtcttggtttattatcagagacggtagaaataagaatcttgtcttctcaaatacgtggacgaatcca |
72059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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