View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_9 (Length: 527)
Name: NF19103_low_9
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Complemental strand, 2378043 - 2377536
Alignment:
| Q |
17 |
aagatgaatatgctgaacgtatcttcctcacaagatccttcaccgtcatgcaaaatcccacatccatctgcaaattgcgggnnnnnnnnttccatattca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2378043 |
aagatgaatatgctgaacgtatcttcctcacaagatccttcaccgtcatgcaaaatcccacatccatctgcaaattgcgggaaaaaaaattccatattca |
2377944 |
T |
|
| Q |
117 |
atcaatcataatcgtgagatcattaaaaatatttagttttcatcctaactacttttaaagtcacatattctattgattattatttggtgacggtgtagtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377943 |
atcaatcataatcgtgagatcattaaaaatatttagttttcatcctaactacttttaaagtcacatattctattgattattatttggtgacggtgtagtg |
2377844 |
T |
|
| Q |
217 |
aaattacctgagcaatgatggttatatcaagggtgaaattcccaaaagtcaaggaactgctattgatgacttttagatgaagtttctcaatttcactcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377843 |
aaattacctgagcaatgatggttatatcaagggtgaaattcccaaaagtcaaggaactgctattgatgacttttagatgaagtttctcaatttcactcat |
2377744 |
T |
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| Q |
317 |
aattttctcaataactccttgactcttcaaacaatgtagtcttatgaggacacttctttcacaaaatcttgcttcaatttcaggtaatgtctcatcatat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377743 |
aattttctcaataactccttgactcttcaaacaatgtagtcttatgaggacacttctttcacaaaatcttgcttcaatttcaggtaatgtctcatcatat |
2377644 |
T |
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| Q |
417 |
gtactattattagtgtctgcacaagagtcttcagcctcattcatagaaagttgagatttcttcactattacaacagattccacagttttcttccttctct |
516 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2377643 |
gtactattattagtgtctgcacga---tcttcagcctcattcatagaaagttgagatttcttcactattacaacagattccacagttttcttccttttct |
2377547 |
T |
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| Q |
517 |
gctcctcctca |
527 |
Q |
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| T |
2377546 |
gttcctcctca |
2377536 |
T |
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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 36766460 - 36766511
Alignment:
| Q |
43 |
ctcacaagatccttcaccgtcatgcaaaatcccacatccatctgcaaattgc |
94 |
Q |
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| T |
36766460 |
ctcacaagatccttcactgtcatgcaaaattccacatccatctgcaaattgc |
36766511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 402
Target Start/End: Original strand, 36766683 - 36766866
Alignment:
| Q |
219 |
attacctgagcaatgatggttatatcaagggtgaaattcccaaaagtcaaggaactgctattgatgacttttagatgaagtttctcaatttcactcataa |
318 |
Q |
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|||||||| ||||| || ||||||||||| | || | ||||| |||| | ||||||||||| |||||||||||| ||||||||||||| || |
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| T |
36766683 |
attacctgtgcaataattgttatatcaagtgcacaacttccaaatgtcatgaaactgctattggtgacttttagattgagtttctcaattttgtggattg |
36766782 |
T |
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| Q |
319 |
ttttctcaataactccttgactcttcaaacaatgtagtcttatgaggacacttctttcacaaaatcttgcttcaatttcaggta |
402 |
Q |
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|||| || | |||||||| | ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
36766783 |
ttttttccacaactcctttgattttctcacaatgaactcttatgaggacatttctatcacaaaatcttgcttcaatttctggta |
36766866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 33817388 - 33817355
Alignment:
| Q |
114 |
tcaatcaatcataatcgtgagatcattaaaaata |
147 |
Q |
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| T |
33817388 |
tcaatcaatcataatcgttagatcattaaaaata |
33817355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 14004334 - 14004367
Alignment:
| Q |
114 |
tcaatcaatcataatcgtgagatcattaaaaata |
147 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
14004334 |
tcaatcaatcataatcgtgagatcatttaaaata |
14004367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 15920274 - 15920245
Alignment:
| Q |
114 |
tcaatcaatcataatcgtgagatcattaaa |
143 |
Q |
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| T |
15920274 |
tcaatcaatcataatcgtgagatcattaaa |
15920245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 4624548 - 4624512
Alignment:
| Q |
114 |
tcaatcaatcataatcgtgagatcattaaaaatattt |
150 |
Q |
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| T |
4624548 |
tcaatcaatcataatcgtcagatcatcaaaaatattt |
4624512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 49598417 - 49598485
Alignment:
| Q |
116 |
aatcaatcataatcgtgagatcattaaaaatatttagttttcatcctaactacttttaaagtcacatat |
184 |
Q |
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||||||||||||| | |||| ||||||||| |||| || ||| ||||||||||||||||||||||| |
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| T |
49598417 |
aatcaatcataattatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatat |
49598485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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