View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_11 (Length: 463)
Name: NF19104_high_11
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 50419927 - 50419645
Alignment:
| Q |
18 |
aagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419927 |
aagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattct |
50419828 |
T |
|
| Q |
118 |
tgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcactacatacttagggattcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419827 |
tgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcactacatacttagggattcca |
50419728 |
T |
|
| Q |
218 |
gttagagtctctctactttgtgaaatgcttatgtctttgtttgtgcaagaacctaatgaaaaccacacacatacacatattag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419727 |
gttagagtctctctactttgtgaaatgcttatgtctttgtttgtgcaagaacctaatgaaaaccacacacatacacatattag |
50419645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 327 - 455
Target Start/End: Complemental strand, 50419618 - 50419490
Alignment:
| Q |
327 |
tcatctcaggtttagaatataaaaggattacattattataaattgacaagtgcataaatattaaataccatgccatgaaaatttagtggaagtagagtgt |
426 |
Q |
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| T |
50419618 |
tcatctcaggtttagaatataaaaggattacattattataaattgacaagtgcataaatattaaataccatgccatgaaaatttagtggaagtagagtgt |
50419519 |
T |
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| Q |
427 |
gcatgttctgctttcactgacagtattat |
455 |
Q |
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| T |
50419518 |
gcatgttctgctttcactgacagtgttat |
50419490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 13046037 - 13046214
Alignment:
| Q |
18 |
aagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattct |
117 |
Q |
| |
|
||||||||||||| || || |||| |||||||| || ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
13046037 |
aagtgaatctaataatctggttagaagttaaaggcttccctccatgcaccaaacaatcatcataagagagtctcttgaacaatttagggttgattattct |
13046136 |
T |
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| Q |
118 |
tgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcac |
198 |
Q |
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||||||||||||||| ||||||||||| || |||| ||| |||||||| | |||||||||||| || ||||||||||| |
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| T |
13046137 |
tgcagaagcaaaccaaccacagtgaagatggatatcataaggagcacatcc---agaaacacaagtgttaacaatttgcac |
13046214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 8997198 - 8997075
Alignment:
| Q |
18 |
aagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattct |
117 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||| || |||||||||||||||| | | || |||| |||||||| |||||| |||| ||| ||||||| |
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| T |
8997198 |
aagtgaatctaataatttggctagaagt-aaaggcttccctccattcaccaaacgaac--cataagagagtctcttaaacaatctaggattgtttattct |
8997102 |
T |
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| Q |
118 |
tgcagaagcaaaccagccacagtgaag |
144 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
8997101 |
tgcagaagcaaaccaaccacagtgaag |
8997075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 9013321 - 9013177
Alignment:
| Q |
18 |
aagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattct |
117 |
Q |
| |
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||||||||||||| || || ||||| || ||||| || |||||||||||||||| | | || |||| |||||||| |||||| |||| ||| ||||||| |
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| T |
9013321 |
aagtgaatctaataatctggctagaagt-aaaggcttccctccattcaccaaaccaac--cataagagagtctcttaaacaatctaggattgtttattct |
9013225 |
T |
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| Q |
118 |
tgcagaagcaaaccagccacagtgaaggtgaatattatatggagcaca |
165 |
Q |
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||||||||||||||| ||||||||||| || |||| || |||||||| |
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| T |
9013224 |
tgcagaagcaaaccaaccacagtgaagatggatatcattaggagcaca |
9013177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 8979855 - 8979797
Alignment:
| Q |
86 |
agtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaag |
144 |
Q |
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|||||||| |||||| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
8979855 |
agtctcttaaacaatctaggattgtttattcttgcagaagcaaaccaaccacagtgaag |
8979797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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