View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_high_12 (Length: 440)

Name: NF19104_high_12
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_high_12
NF19104_high_12
[»] chr6 (5 HSPs)
chr6 (27-423)||(10068156-10068570)
chr6 (49-132)||(3441246-3441331)
chr6 (59-123)||(10483608-10483674)
chr6 (49-132)||(12185735-12185820)
chr6 (49-123)||(25070423-25070499)
[»] chr7 (4 HSPs)
chr7 (52-132)||(46603724-46603806)
chr7 (52-132)||(33902243-33902325)
chr7 (73-123)||(9603488-9603540)
chr7 (73-123)||(9831059-9831111)
[»] chr3 (4 HSPs)
chr3 (48-123)||(37820824-37820901)
chr3 (52-122)||(50744750-50744822)
chr3 (52-162)||(31229722-31229833)
chr3 (49-123)||(41242216-41242292)
[»] chr1 (1 HSPs)
chr1 (52-123)||(49423339-49423412)
[»] scaffold0007 (1 HSPs)
scaffold0007 (47-132)||(176248-176336)
[»] chr4 (2 HSPs)
chr4 (56-123)||(31040283-31040353)
chr4 (55-132)||(3067634-3067713)
[»] chr5 (1 HSPs)
chr5 (52-84)||(12453972-12454004)
[»] chr2 (1 HSPs)
chr2 (49-122)||(15081331-15081406)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 27 - 423
Target Start/End: Original strand, 10068156 - 10068570
Alignment:
Q  27 ttaaagagaaatgctaacttgacacaagttaagaaactaaatatagaaatattttattggattgtgcatttcatgttttagaaatttagaatcttatttt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |    
T  10068156 ttaaagagaaatgctaacttgacacaagttaagaaactaaatatagaaatattttattggattgtgcatttcatgttttagaaatttaaaattttattct 10068255  T
Q  127 gtcaagnnnnnnntttatgttttacttctatttttac-----------------taagggcacaagttagcaagacccaaaattaaaaagttaannnnnn 209  Q
    ||||||       ||||||||||| ||  ||||||||                 ||||||||||||||| ||||||||||||||||||||||||          
T  10068256 gtcaagacaaaa-tttatgttttaatttcatttttaccttattaacttgtgtcctaagggcacaagttaacaagacccaaaattaaaaagttaatttttt 10068354  T
Q  210 nnngttagaaattaatgtgaacttaatggttaaatctttatttataattccaaatgatctttctcacataacaagttcatgatagaaatacttctttacc 309  Q
       |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10068355 tt-gttagaaattaatgtgaacttaatagttaaatctttatttataattcaaaatgatctttctcacataacaagttcatgatagaaatacttcttcacc 10068453  T
Q  310 aataatagagatacttctttccctgaat---nnnnnnnnnngagatacttctttcccatctcataatgcacaagttctgaatcctatattcaatcttccc 406  Q
    ||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10068454 aataatagagatacttctttccctgaataaaaaaaaaaaaagagatacttctttcccatctcataatgcacaagttctgaatcctatattcaatcttccc 10068553  T
Q  407 attttgatgaaataatc 423  Q
    |||||||||||||||||    
T  10068554 attttgatgaaataatc 10068570  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 3441331 - 3441246
Alignment:
Q  49 cacaagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttattttgtcaag 132  Q
    |||||||||| ||| |||| ||||||| ||||||| |||  ||||||||||||| |||||||| |||| |||||||| || |||||    
T  3441331 cacaagttaaaaaattaaagatagaaacattttataggaaattgtgcatttcatattttagaactttaaaatcttatattttcaag 3441246  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 10483674 - 10483608
Alignment:
Q  59 gaaactaaatatagaaatattttattgg--attgtgcatttcatgttttagaaatttagaatcttat 123  Q
    ||||||||| ||||||| ||||||||||  |||||| ||| ||| ||||||||||||| ||||||||    
T  10483674 gaaactaaagatagaaacattttattggatattgtgtattacatattttagaaatttaaaatcttat 10483608  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 12185820 - 12185735
Alignment:
Q  49 cacaagttaagaaactaaatatagaaatattttattg--gattgtgcatttcatgttttagaaatttagaatcttattttgtcaag 132  Q
    ||||||||||||||||||| ||||||||||||| |||   ||||||||||  || || |||||||| | |||||||| || |||||    
T  12185820 cacaagttaagaaactaaaaatagaaatattttgttgaaaattgtgcattcaatattctagaaattcaaaatcttatcttttcaag 12185735  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 25070499 - 25070423
Alignment:
Q  49 cacaagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttat 123  Q
    |||||||||| |||||||| ||| ||| ||||||||  |  ||||| ||||||| ||||||||||||| ||||||||    
T  25070499 cacaagttaaaaaactaaagatataaacattttattaaaaattgtgtatttcatattttagaaatttaaaatcttat 25070423  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 46603724 - 46603806
Alignment:
Q  52 aagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttattttgtcaag 132  Q
    |||||||||||||||| |||||||  ||||||||||  ||||||||||||||||||||||||||| |||||||| || |||||    
T  46603724 aagttaagaaactaaagatagaaactttttattggaaattgtgcatttcatgttttagaaatttaaaatcttatcttttcaag 46603806  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 33902325 - 33902243
Alignment:
Q  52 aagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttattttgtcaag 132  Q
    ||||||| ||| |||| ||||||||||||||||| |  || ||||||| || ||||||||||||| |||||||| || |||||    
T  33902325 aagttaaaaaattaaagatagaaatattttattgaaaattatgcatttaatattttagaaatttaaaatcttatcttttcaag 33902243  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 9603488 - 9603540
Alignment:
Q  73 aaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttat 123  Q
    ||||||||||||| |  || |||||||||||||||||||||||| ||||||||    
T  9603488 aaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttat 9603540  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 9831059 - 9831111
Alignment:
Q  73 aaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttat 123  Q
    ||||||||||||| |  || |||||||||||||||||||||||| ||||||||    
T  9831059 aaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttat 9831111  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 37820901 - 37820824
Alignment:
Q  48 acacaagttaagaaactaaatatagaaatattttattgg--attgtgcatttcatgttttagaaatttagaatcttat 123  Q
    ||||||||||| |||||||||||| ||||||||||||||  ||| |||||| ||||||||||||||||| ||||||||    
T  37820901 acacaagttaataaactaaatataaaaatattttattggaaattatgcattccatgttttagaaatttaaaatcttat 37820824  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 50744822 - 50744750
Alignment:
Q  52 aagttaagaaactaaatatagaaatattttatt--ggattgtgcatttcatgttttagaaatttagaatctta 122  Q
    |||||||||||||||| ||| ||||||||||||    |||||||||||||| ||||| ||||||| |||||||    
T  50744822 aagttaagaaactaaagatataaatattttattaaaaattgtgcatttcatattttaaaaatttaaaatctta 50744750  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 31229833 - 31229722
Alignment:
Q  52 aagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttattttgtcaagnnnnnnntttatgtttt 149  Q
    ||||||||| | || ||||||||| |||||||||||  |||| ||||  |||||||||||||||| ||||||||  | |||||       ||||||||||    
T  31229833 aagttaagagattacatatagaaacattttattggaaattgtacattctatgttttagaaatttaaaatcttatgatttcaag-atataatttatgtttt 31229735  T
Q  150 acttctattttta 162  Q
    |||||||||||||    
T  31229734 acttctattttta 31229722  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 41242292 - 41242216
Alignment:
Q  49 cacaagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttat 123  Q
    ||||||||||||||| ||| ||| ||| ||||| |||||  |||||||||| || ||||||||||||  ||||||||    
T  41242292 cacaagttaagaaaccaaagataaaaacattttgttggaaattgtgcatttaatattttagaaatttgaaatcttat 41242216  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 49423339 - 49423412
Alignment:
Q  52 aagttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttat 123  Q
    ||||||| ||| |||| ||| ||||||||||||| |  ||||||||||||||||||| ||||||| ||||||||    
T  49423339 aagttaataaattaaacataaaaatattttattgaaaattgtgcatttcatgttttaaaaatttaaaatcttat 49423412  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 176336 - 176248
Alignment:
Q  47 gacacaagttaagaaactaaat-atagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttattttgtcaag 132  Q
    |||||||||||||||||||||  |||||| ||| |||||| |  |||||||||| |||||||||||||||| |||| ||| || |||||    
T  176336 gacacaagttaagaaactaaaagatagaagtatcttattgaaaattgtgcattttatgttttagaaatttaaaatcctatattttcaag 176248  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 31040283 - 31040353
Alignment:
Q  56 taagaaactaaatatagaaatattttattgg--attgtgcat-ttcatgttttagaaatttagaatcttat 123  Q
    ||||||| |||||||| ||||||||||||||  ||| ||||| || |||||||||||||||| ||||||||    
T  31040283 taagaaattaaatataaaaatattttattggaaattatgcatattaatgttttagaaatttaaaatcttat 31040353  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 3067713 - 3067634
Alignment:
Q  55 ttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttagaatcttattttgtcaag 132  Q
    ||||||||| ||| ||||||| ||||| |||||  |||||||||  || ||||||||||||| |||||||| || |||||    
T  3067713 ttaagaaaccaaagatagaaacattttgttggaaattgtgcattcaatattttagaaatttaaaatcttatcttttcaag 3067634  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 12454004 - 12453972
Alignment:
Q  52 aagttaagaaactaaatatagaaatattttatt 84  Q
    ||||||||||||||||||||||| |||||||||    
T  12454004 aagttaagaaactaaatatagaagtattttatt 12453972  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 15081406 - 15081331
Alignment:
Q  49 cacaagttaagaaactaaatatagaaatattttattg--gattgtgcatttcatgttttagaaatttagaatctta 122  Q
    |||||||||||| | | |||||||||| |||||||||   ||||||||||  || ||||||||||||| |||||||    
T  15081406 cacaagttaagagattcaatatagaaacattttattgaaaattgtgcattctatcttttagaaatttaaaatctta 15081331  T

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