View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_13 (Length: 424)
Name: NF19104_high_13
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_13 |
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| [»] scaffold0149 (1 HSPs) |
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| [»] scaffold0888 (1 HSPs) |
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Alignment Details
Target: scaffold0149 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 31177 - 31566
Alignment:
| Q |
18 |
agtattgattcttgattttttaccatccaacgaattcaatcgttgataaagatgagctataaaaatttaaaggttttcacatcccgccatactatgtttg |
117 |
Q |
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| T |
31177 |
agtattgattcttgattttttaccatccaacgaattcaatcgttgataaagatgagctataaaaatttaaaggttttcacatcccgccatactatgtttg |
31276 |
T |
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| Q |
118 |
tctttgttacccccataaaatttcttttggttgttccgtggagatgtttttccattcccttttgtttctaggagttaatcactgtatttatgactaagag |
217 |
Q |
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| T |
31277 |
tctttgtttcccccataaaatttcttttcgttgttccgtggagatgtttttccattcccttttgtttctaggagttaatcactgtatttatgactaagag |
31376 |
T |
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| Q |
218 |
aaacctttcctttctcttccctctaatatttttactgcttttgttgctttttggtagagaagttaggttg-nnnnnnngtagttaaactggcccattgat |
316 |
Q |
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| T |
31377 |
aaacctttcctttctcttccctcttatatttttactgcttttgttgctttttggtagagaagttaggttgttttttttgtagttaaa----cccattgat |
31472 |
T |
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| Q |
317 |
aaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaagaacgcgcttagtttc |
411 |
Q |
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| T |
31473 |
aaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaa-cacgcgcttagtttc |
31566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 14888210 - 14888295
Alignment:
| Q |
312 |
ttgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaaga |
397 |
Q |
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| T |
14888210 |
ttgataaagaggatcttacctaggctcgtacgttagtaagtattatgtcggctttgtcaaaaatatattgtattgtaccacgaaga |
14888295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0888 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0888
Description:
Target: scaffold0888; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 3183 - 3248
Alignment:
| Q |
86 |
aaaggttttcacatcccgccatactatgtttgtctttgttacccccataaaatttcttttggttgttc |
153 |
Q |
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| T |
3183 |
aaaggttttcacatccctccatacgttgtttgtctttgtt--ccccataaactttcttttcgttgttc |
3248 |
T |
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