View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_14 (Length: 421)
Name: NF19104_high_14
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 5688440 - 5688818
Alignment:
| Q |
1 |
cgccggtacaacattatgagtaaacaaaaggctggtctaagacgcacaacttcacctccatcactaccaacttcacttacaggttccacatacatattta |
100 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688440 |
cgccagtacaacattatgagtaaacaaaaggctgg------------aacttcacctccatcactaccaacttcacttacaggttccac----------- |
5688516 |
T |
|
| Q |
101 |
gagttgtaaaaatgggctagcccgccaaatctaataaaatgtagagtttgaatcataaaatattgtctcagannnnnnnncaaaataatgtttataagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
5688517 |
----tgtaaaaatgggctagcccgccaaatctaataaaatgtagagtttgaaccataaaatatagtctcagattttttttcaaaataatgtttataagaa |
5688612 |
T |
|
| Q |
201 |
attttgtgagagtctttataatattttcnnnnnnntaaataaggtcttacctttttaatcaacaactcatacatagggccgacttcatatagtattttta |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688613 |
attttgtgagagtctttataatattttcaaaaaaataaataaggtcttacctttttaatcaacaactcatacatagggccgacttcatatagtattttta |
5688712 |
T |
|
| Q |
301 |
tagctcatacttgaaagaactttttggcctaacgcgataaaggttgttaaggccgatctgtttaaggttagataacccattttgagagctctacacatat |
400 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5688713 |
tagctcgtacttgaaagaactttttggcctaaagcgataaaggttgttagggccgatctctttaaggttagataacccattttgagagctctacacataa |
5688812 |
T |
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