View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_16 (Length: 407)
Name: NF19104_high_16
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 179 - 391
Target Start/End: Complemental strand, 7903825 - 7903612
Alignment:
| Q |
179 |
ctttgataaatttttacatcaataaaaagttatttaatatggtgtatatgcgcgcgcgcg-aacatgctttgtatgctatgtaataactcgtaaatgatc |
277 |
Q |
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| T |
7903825 |
cttttatacatttttacattaataaaaagttatttaatatggtgtatatgcgcgcgcgcggaacatgctttgtatgctatgtaataactcgtaaatgatc |
7903726 |
T |
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| Q |
278 |
ttgtttgggacaatgaaggatttggaaggatcggtcgtttggtggccagggtggcattggagagagatgacgtggagcttgttgcagttaatgatccttt |
377 |
Q |
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| T |
7903725 |
ttgtttgtgacaatgaaggatttggaaggatcggtcgtttggtggccagggtggcattggagagagatgacgtggagcttgttgcagttaatgatccttt |
7903626 |
T |
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| Q |
378 |
catcaccactgatt |
391 |
Q |
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| T |
7903625 |
catcaccactgatt |
7903612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 7903887 - 7903823
Alignment:
| Q |
14 |
aggcaactttttacattttttcttggttgttatagacatatataggacgatatcgagtcacactt |
78 |
Q |
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| T |
7903887 |
aggcaactttttacattttttcttggttgttatagacatatataggacgatatcgagtcacactt |
7903823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 42992915 - 42992818
Alignment:
| Q |
294 |
aggatttggaaggatcggtcgtttggtggccagggtggcattggagagagatgacgtggagcttgttgcagttaatgatcctttcatcaccactgatt |
391 |
Q |
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| T |
42992915 |
aggatttggaagaatcggacgtttggttgctagagttgctttgaagagagatgatgttgaactcgttgctgttaacgatcctttcatcaccactgatt |
42992818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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