View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_high_22 (Length: 372)

Name: NF19104_high_22
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_high_22
NF19104_high_22
[»] chr4 (9 HSPs)
chr4 (16-355)||(31157326-31157665)
chr4 (24-182)||(31017839-31017997)
chr4 (20-147)||(31027895-31028022)
chr4 (13-338)||(31148429-31148766)
chr4 (20-95)||(31032510-31032585)
chr4 (272-347)||(31526524-31526599)
chr4 (20-92)||(31498675-31498747)
chr4 (251-355)||(31498843-31498947)
chr4 (278-355)||(31478815-31478892)
[»] scaffold1408 (1 HSPs)
scaffold1408 (261-354)||(757-850)
[»] scaffold0428 (1 HSPs)
scaffold0428 (261-354)||(6503-6596)
[»] chr6 (14 HSPs)
chr6 (274-354)||(33271935-33272015)
chr6 (260-354)||(33644344-33644438)
chr6 (261-354)||(33057679-33057772)
chr6 (277-354)||(33358977-33359054)
chr6 (301-354)||(28870014-28870067)
chr6 (301-354)||(33262736-33262789)
chr6 (301-354)||(33399164-33399217)
chr6 (301-353)||(33285729-33285781)
chr6 (23-95)||(33304859-33304931)
chr6 (301-348)||(31562666-31562713)
chr6 (300-354)||(33388270-33388324)
chr6 (22-95)||(9167148-9167221)
chr6 (58-95)||(33272179-33272216)
chr6 (301-354)||(33304594-33304647)
[»] chr7 (1 HSPs)
chr7 (305-352)||(6785236-6785283)
[»] chr2 (1 HSPs)
chr2 (219-354)||(17440643-17440778)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 31157665 - 31157326
Alignment:
Q  16 atacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31157665 atacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattt 31157566  T
Q  116 tatttcattcccaatcaacaacttcccccttgaaatggaccacaattggtttgcattccttgtatcatgaagttttaactagttgtttgctaccttcttt 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31157565 tatttcattcccaatcaacaacttcctccttgaaatggaccacaattggtttgcattccttgtatcatgaagttttaactagttgtttgctaccttcttt 31157466  T
Q  216 tcttagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31157465 tcttagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaat 31157366  T
Q  316 ataggggggaacaattttgtgacactgcctagcctgaggg 355  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31157365 ataggggggaacaattttgtgacactgcctagcctgaggg 31157326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 31017997 - 31017839
Alignment:
Q  24 tctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattttatttcat 123  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| | | || | |||    
T  31017997 tctcacctctcttaaatatctaaatctttctgggtgttccaaagtgtttaactatccaaagcatttgaagaaacttgattcgagtgaaactgtactacat 31017898  T
Q  124 tcccaatcaacaacttcccccttgaaatggaccacaattggtttgcattccttgtatca 182  Q
    |||||||||| ||||||| |||||| || |||||| |||||||| ||||||||||||||    
T  31017897 tcccaatcaaaaacttcctccttgatattgaccacgattggtttacattccttgtatca 31017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 31028022 - 31027895
Alignment:
Q  20 ttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattttatt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||| ||| ||||    
T  31028022 ttggtctcacctctcttaaatatctaaatctttcctggtgttccaaagtgtttaccaatacaaggcatttgaataaacttgattcgagtgaaattgtatt 31027923  T
Q  120 tcattcccaatcaacaacttcccccttg 147  Q
     |||||||| |||||||||||| |||||    
T  31027922 acattcccagtcaacaacttcctccttg 31027895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 31148766 - 31148429
Alignment:
Q  13 aatatacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgata 112  Q
    |||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||| |||| |||   |||||| ||||| |    
T  31148766 aatatatttggtctcagctctcttgaatgtctaaatctttcggggtgttccaaagtgtttaagaatccaaggcaattgaggaagcatgattcaagtgaaa 31148667  T
Q  113 ttttatttcattcccaatcaacaacttcccc---cttgaaatggaccacaattggtttgcattccttgtatc---atg------aagttttaactagttg 200  Q
     || ||  ||||  ||||||||||||||| |   ||| ||||||||||  |||  ||| |||||||||||||   |||      ||| | || ||||| |    
T  31148666 gttcatcacattttcaatcaacaacttcctcaatcttaaaatggaccaggattcatttccattccttgtatccctatgcacacaaagatatagctagtcg 31148567  T
Q  201 tttgctaccttcttttcttagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcga 300  Q
    ||| || | ||| || |||||| |||  ||||||| |||  ||||||| ||||| |||||| ||||| | || ||  ||||||||||| || ||| | |     
T  31148566 ttttctgcattccttgcttagcttatcttgtttgaatgatcttgatattagtttttgtggtataagccaactaccgaatgcaattggacgtttacgttgg 31148467  T
Q  301 ctagaaagattaaatataggggggaacaattttgtgac 338  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  31148466 ctagaaagattaaatctagggggaaacaattttgtgac 31148429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 31032585 - 31032510
Alignment:
Q  20 ttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  31032585 ttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaatgcaattgaagaa 31032510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 31526599 - 31526524
Alignment:
Q  272 tccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctag 347  Q
    |||||||||| ||||| || |||||| |  |||||||||||||| ||||||| ||||||||||||||| |||||||    
T  31526599 tccctgatgctattggttgcctactttggttagaaagattaaatttagggggaaacaattttgtgacattgcctag 31526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31498675 - 31498747
Alignment:
Q  20 ttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaa 92  Q
    |||||||||||| ||||||| |||||||| | |  ||||||||| |||||||||||| |||| || |||||||    
T  31498675 ttggtctcagctttcttaaagatctaaatatgtgtgggtgttccgaagtgtttaacattccatgggatttgaa 31498747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 31498843 - 31498947
Alignment:
Q  251 gtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcct 350  Q
    |||| |||||||||| | | ||||| ||||||||||||||| ||| | |  |||||   |||||| ||||||| ||||| ||||||||| | ||||||||    
T  31498843 gtttttgtggtctaaaccaactccccgatgcaattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcct 31498942  T
Q  351 gaggg 355  Q
    |||||    
T  31498943 gaggg 31498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 31478815 - 31478892
Alignment:
Q  278 atgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgaggg 355  Q
    |||||||||||||||||  | |  |||||  ||||||| ||||||| ||||||||||||||| | ||||| |||||||    
T  31478815 atgcaattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgaggg 31478892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 850 - 757
Alignment:
Q  261 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||| || | ||||||||||||| |||| ||| ||| ||||||||||||||| ||||||| || |||||||||||||| |||||| |||||    
T  850 tctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaataattttgtgacactacctagcatgagg 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 6596 - 6503
Alignment:
Q  261 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||| || | ||||||||||||| |||| ||| ||| ||||||||||||||| ||||||| || |||||||||||||| |||||| |||||    
T  6596 tctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaataattttgtgacactacctagcatgagg 6503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 33272015 - 33271935
Alignment:
Q  274 cctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||| |||| ||| | | |||||||||||| || ||||||| ||||||||||||||||| ||||||||||||    
T  33272015 cctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacactacctagcctgagg 33271935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 33644344 - 33644438
Alignment:
Q  260 gtctaagctatctccctgatgcaattggatgtctac-ttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    |||||||| || | |||||| |||||| |||| ||| |||| ||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  33644344 gtctaagccatgttcctgattcaattgaatgtttacattcg-ctagaaagattaaatttagggggaaactattttgtgacactacctagcctgagg 33644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 33057772 - 33057679
Alignment:
Q  261 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||| || | ||||||||||||| |||| ||| | | ||||||||||||||| ||| ||| ||| ||||||||||| | ||||||||||||    
T  33057772 tctaagccatgtgcctgatgcaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgagg 33057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 33359054 - 33358977
Alignment:
Q  277 gatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    |||||||||| |||| ||| | | ||||||| ||||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  33359054 gatgcaattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgagg 33358977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 28870014 - 28870067
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||  || |||| ||| ||||||||||||||||||||||||||    
T  28870014 ctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgagg 28870067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 33262789 - 33262736
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||| ||||||| ||  ||||||||||||| ||||||||||||    
T  33262789 ctagaaagattaaatttagggggaaatgattttgtgacactacctagcctgagg 33262736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 33399217 - 33399164
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||| ||  ||| ||||||||||||||||| ||||||||||||    
T  33399217 ctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgagg 33399164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 33285781 - 33285729
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgag 353  Q
    ||||||| ||||||  ||||||| ||||||||||||||||| |||||||||||    
T  33285781 ctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgag 33285729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 33304931 - 33304859
Alignment:
Q  23 gtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    |||| ||||||||| || |||||||| | |  || ||||||||||||||||| ||||||| ||||||||||||    
T  33304931 gtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaa 33304859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 31562666 - 31562713
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagc 348  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| ||||||    
T  31562666 ctagaaagattaaatttagggggaaactattttgtgacactacctagc 31562713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 33388324 - 33388270
Alignment:
Q  300 actagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    |||||||| ||||||| ||||||| ||| ||||||||||||| |||||| |||||    
T  33388324 actagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgagg 33388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 9167221 - 9167148
Alignment:
Q  22 ggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    ||||| |||||||||||| |||||||| | |  || ||||||||| ||||| || || ||||||||||||||||    
T  9167221 ggtcttagctctcttaaagatctaaatatgtgtggctgttccaaattgtttgacgattcaaggcatttgaagaa 9167148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 33272216 - 33272179
Alignment:
Q  58 tgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  33272216 tgttctaaagtgtttaacaatccaatgcatttgaagaa 33272179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 33304647 - 33304594
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||  ||| ||| |||||||||||||| || ||||||||||||    
T  33304647 ctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgagg 33304594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 6785236 - 6785283
Alignment:
Q  305 aaagattaaatataggggggaacaattttgtgacactgcctagcctga 352  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||||||||||    
T  6785236 aaagattaaatttagggggaaaccattttgtgacattgcctagcctga 6785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 17440643 - 17440778
Alignment:
Q  219 tagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatata 318  Q
    |||| |||| |||||| |||||||||| || ||||| ||  |||||||| |  | || ||| |||||| |||| ||| | |  |||||||||||||| ||    
T  17440643 tagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaaattta 17440742  T
Q  319 ggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||| ||  |||||| |||||| ||||||||||||    
T  17440743 gggggaaatgattttgcgacactacctagcctgagg 17440778  T

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