View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_23 (Length: 365)
Name: NF19104_high_23
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 248379 - 248715
Alignment:
| Q |
11 |
cacagaagaggaatccaagttgtggggtccccttcccctaaaataaaaggaggtgattgagggtggtgtaggataaggatattgagtaagaggaagagaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
248379 |
cacacaagaggaatccaagttgtggggtccccttcccctaaaataaaaggaggtgattgagggtggtataggataaggatattgagtaagagggagagaa |
248478 |
T |
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| Q |
111 |
gggtcacccaatcctaaacttaatgaaagggatccaaggaaagaaaagaatgtactaggatgaattttgtctaattttgttttggtataccnnnnnnntc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
248479 |
gggtcacccaatcctaaacttaatgaaagggatccaaggaaagaaaagaatgtactaggatgaattttgtctaattttgttttggtataccaaaaaaatc |
248578 |
T |
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| Q |
211 |
tcacattacttgaaaaccgaggttacgaacttacgagtaatttataaacacgcactcaattgaacaacgacttttaactaagccgcatttgtgaagtgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
248579 |
tcacattacttgaaaaccgaggttacgaacttacgagtaatttataaacacgcactcaattgaacaacgacttttaactaagccgcatttgtgaagtgaa |
248678 |
T |
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| Q |
311 |
gtttctataatatctaaagtggacaatacctcggaag |
347 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
248679 |
gtttctataatatctaaagtggacaatacctcagaag |
248715 |
T |
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