View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_24 (Length: 362)
Name: NF19104_high_24
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 32881388 - 32881110
Alignment:
| Q |
1 |
caacccagttaatgatccacttactacgagaaattgatatttgaattgttattttaaatattggaaataattgtatatctaaaatggttttgcatcctta |
100 |
Q |
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| T |
32881388 |
caacccatttaatgatccccttactacgagaaattgatatttgaattgttattttaaatattggaaatatttctatatctaaaatgtttttgcatccttg |
32881289 |
T |
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| Q |
101 |
ctacgagaaataggtgttttgggtgacatgacttattgattcattatatgtgaataaaattttacaggcctttcatataaactttgaataacacgatgag |
200 |
Q |
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| T |
32881288 |
ctacgagaaataggtgttttgggtgacatgacttattgtttcgttatatgtgaataaaattttacaggcctttcatataaactttgaataacacgatgag |
32881189 |
T |
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| Q |
201 |
aatgaagggtgcactgtacctttggttttatctggatcgtgctaacagtctttaattttttattagaaaacgacacaga |
279 |
Q |
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| T |
32881188 |
aatgaaggttgcactgtacctttggttttatctggatcgtgctaacagtctttaattttttattagaaaacgacacaga |
32881110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 32881084 - 32881036
Alignment:
| Q |
306 |
gctaggtttgttgtttttggctttactattgatagattttgatattctt |
354 |
Q |
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| T |
32881084 |
gctaggtttgttgtttttggctttactattgatagattttgattttctt |
32881036 |
T |
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