View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_high_25 (Length: 361)

Name: NF19104_high_25
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_high_25
NF19104_high_25
[»] chr7 (2 HSPs)
chr7 (122-351)||(27117753-27117982)
chr7 (124-239)||(27118379-27118495)
[»] chr4 (3 HSPs)
chr4 (122-351)||(53371779-53372008)
chr4 (122-351)||(23010942-23011171)
chr4 (197-241)||(21604163-21604207)
[»] scaffold0316 (1 HSPs)
scaffold0316 (122-351)||(2898-3127)
[»] chr1 (6 HSPs)
chr1 (1-122)||(2263896-2264017)
chr1 (131-260)||(32239438-32239567)
chr1 (123-221)||(32240033-32240131)
chr1 (298-351)||(32239579-32239632)
chr1 (123-202)||(51164866-51164945)
chr1 (122-221)||(51165417-51165516)
[»] chr3 (1 HSPs)
chr3 (124-296)||(7266605-7266776)
[»] chr8 (1 HSPs)
chr8 (122-187)||(41763787-41763852)
[»] chr5 (1 HSPs)
chr5 (125-167)||(5397437-5397479)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 122 - 351
Target Start/End: Original strand, 27117753 - 27117982
Alignment:
Q  122 ggagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaa 221  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  27117753 ggagtccagatctgctcaatttatgcagttctccatttacccggttctcttcaccgatggatgacacatggcaactaaaaatccgatagctaggattaaa 27117852  T
Q  222 cacatcaattgatgaaagccttagagaatcacttccatccatgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat 321  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27117853 cacatcaattgatgaaagccagagagaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat 27117952  T
Q  322 atccaactattcctcttctctccatctgtg 351  Q
    |||||||||||||||||||||||| |||||    
T  27117953 atccaactattcctcttctctccacctgtg 27117982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 27118495 - 27118379
Alignment:
Q  124 agtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaaca 223  Q
    ||||||||||| ||| |||||||||| ||||  ||||||| ||||| || || |||||||||||  |||||| ||||| |||||  | ||| |||||| |    
T  27118495 agtccagatctactctatttatgcagctgtctgtttacccagttctttttacggatggatgacatgtggcaattaaaatttcgagagttagaattaaaaa 27118396  T
Q  224 -catcaattgatgaaag 239  Q
     |||||||| |||||||    
T  27118395 gcatcaatttatgaaag 27118379  T

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Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 122 - 351
Target Start/End: Complemental strand, 53372008 - 53371779
Alignment:
Q  122 ggagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaa 221  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  53372008 ggagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa 53371909  T
Q  222 cacatcaattgatgaaagccttagagaatcacttccatccatgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat 321  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  53371908 cacatcaattgatgaaagccatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat 53371809  T
Q  322 atccaactattcctcttctctccatctgtg 351  Q
    ||||||||||| |||||||||||| |||||    
T  53371808 atccaactatttctcttctctccacctgtg 53371779  T

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Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 122 - 351
Target Start/End: Original strand, 23010942 - 23011171
Alignment:
Q  122 ggagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaa 221  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  23010942 ggagtgcagatctgctccatttatgcagctgtccatttacctggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa 23011041  T
Q  222 cacatcaattgatgaaagccttagagaatcacttccatccatgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat 321  Q
    |||||||||||||||||| | |||||||||| |||||||| ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  23011042 cacatcaattgatgaaagtcatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat 23011141  T
Q  322 atccaactattcctcttctctccatctgtg 351  Q
    ||||||||||| |||||||||||| |||||    
T  23011142 atccaactatttctcttctctccacctgtg 23011171  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 21604163 - 21604207
Alignment:
Q  197 taaaaattcgatggctaggattaaacacatcaattgatgaaagcc 241  Q
    ||||||||  ||||||||||||||| |||| ||||||||||||||    
T  21604163 taaaaattgaatggctaggattaaaaacatgaattgatgaaagcc 21604207  T

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Target: scaffold0316 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 122 - 351
Target Start/End: Complemental strand, 3127 - 2898
Alignment:
Q  122 ggagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaa 221  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||    
T  3127 ggagtgcagatctgctccatttatgcagctgtccatttacccgattctcttcactgatggatgacacgtggcaactaaaaatcagatggttaggattaaa 3028  T
Q  222 cacatcaattgatgaaagccttagagaatcacttccatccatgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat 321  Q
    |||||||||||||||||||| |||| ||||| |||||||| ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  3027 cacatcaattgatgaaagccatagataatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat 2928  T
Q  322 atccaactattcctcttctctccatctgtg 351  Q
    ||||||||||| |||||||||||| |||||    
T  2927 atccaactatttctcttctctccacctgtg 2898  T

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Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2263896 - 2264017
Alignment:
Q  1 attggcttgcatttctagaaacgatggaaatatcaaaagaatatattgtcattattttttgaaatacaccatttctaactcacattttatcttatcttta 100  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2263896 attgacttgcatttctagaaactatggaaatatcaaaagaatatattgtcattattttttgaaatacaccatttctaactcacattttatcttatcttta 2263995  T
Q  101 tcacaatgactcactttaaaag 122  Q
    ||||||||||||||||||||||    
T  2263996 tcacaatgactcactttaaaag 2264017  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 32239438 - 32239567
Alignment:
Q  131 atctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaacacatcaat 230  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  32239438 atctgctccatttatgcagctgtccatttactcagttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaacacatcaat 32239537  T
Q  231 tgatgaaagccttagagaatcacttccatc 260  Q
    ||||||||||| ||||||||||||||||||    
T  32239538 tgatgaaagccatagagaatcacttccatc 32239567  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 32240131 - 32240033
Alignment:
Q  123 gagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaa 221  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  32240131 gagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa 32240033  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 32239579 - 32239632
Alignment:
Q  298 ttctccatcgctgaccccaaccatatccaactattcctcttctctccatctgtg 351  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||| || |||||    
T  32239579 ttcttcatcgctaaccccaaccatatccaactatttctcttctctacacctgtg 32239632  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 51164866 - 51164945
Alignment:
Q  123 gagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaa 202  Q
    |||| |||||||||||||||| |  |  |||||| |||||||||||| ||||| |||  |||||||||||||| ||||||    
T  51164866 gagtgcagatctgctccatttctatatatgtccagttacccggttcttttcacagatacatgacacatggcaattaaaaa 51164945  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 51165516 - 51165417
Alignment:
Q  122 ggagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaa 221  Q
    ||||| |||||||||||||||| |  |  |||||| |||||||||||| ||||| |||  ||||||| |||||| |||||| || ||||||  |||||||    
T  51165516 ggagtgcagatctgctccatttttatatctgtccagttacccggttcttttcacagatacatgacacgtggcaattaaaaactcaatggctgagattaaa 51165417  T

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Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 124 - 296
Target Start/End: Original strand, 7266605 - 7266776
Alignment:
Q  124 agtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgacacatggcaactaaaaattcgatggctaggattaaaca 223  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||||||||| |||| |||| ||||||||| |||||| || ||||||||||||||| |    
T  7266605 agtctagatctgctccatttatgcatctatccatttacccggttctcttcaccgatgaatgatacatggcaattaaaaactccatggctaggattaaaaa 7266704  T
Q  224 catcaattgatgaaagccttagagaatcacttccatccatgacccccaatcatagcaactactcctcttctct 296  Q
    |||||||| ||||||||| | ||||| ||||||||||| ||| ||||||||| |  |||||||||||||||||    
T  7266705 catcaatttatgaaagccatggagaagcacttccatccctga-ccccaatcacaataactactcctcttctct 7266776  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 41763787 - 41763852
Alignment:
Q  122 ggagtccagatctgctccatttatgcagttgtccatttacccggttctcttcactgatggatgaca 187  Q
    ||||| |||||||||||||||||||||  |||||||||| ||| |||||||||| |||||||||||    
T  41763787 ggagtgcagatctgctccatttatgcaactgtccatttatccgattctcttcaccgatggatgaca 41763852  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 5397479 - 5397437
Alignment:
Q  125 gtccagatctgctccatttatgcagttgtccatttacccggtt 167  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  5397479 gtccagatctgctccatttatgcatttgtccatttacacggtt 5397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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