View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19104_high_31 (Length: 311)
Name: NF19104_high_31
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 39847825 - 39847522
Alignment:
| Q |
1 |
tatcagagaggatgatttattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttcttttgtgattt-aacatatgtt |
99 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39847825 |
tatcggagaggatgatatattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttcttttgtgattttaacatatgtt |
39847726 |
T |
|
| Q |
100 |
gcggtaaaaggtggactttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39847725 |
gcggtaaaaggtggactttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaa |
39847626 |
T |
|
| Q |
200 |
tcttaacaaagttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggtttgctttgtctgtctgacttactagtattatc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39847625 |
tcttaacaaagttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggtttgctttgtctgtctgacttactaatattatt |
39847526 |
T |
|
| Q |
300 |
tacc |
303 |
Q |
| |
|
|||| |
|
|
| T |
39847525 |
tacc |
39847522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 39864840 - 39864571
Alignment:
| Q |
9 |
aggatgatttattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttcttttgtgatttaacatatgttgcggtaaaa |
108 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
39864840 |
aggatgatatgttactttttttcaagttatatgatcctgaaaaagaggagctacggtactgaataatttattgtgtgatttaacatatgttctggtaaac |
39864741 |
T |
|
| Q |
109 |
ggtggactttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaatcttaacaa |
208 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||| | |
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| T |
39864740 |
ggtggaccttagttgattcgaaatgtatttccctt-tatggcagttatgctggaaggttctttgtgaactgtactgataagccatcagaaatcttaacta |
39864642 |
T |
|
| Q |
209 |
agttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggtttgctttgtctg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |
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|
| T |
39864641 |
gcttaaataaattggctggttatgatcctgatgaagagattgaactttatgaggttggtttgttttgtctg |
39864571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 39911193 - 39910920
Alignment:
| Q |
9 |
aggatgatttattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataattt-cttttgtgattt--aacatatgttgcggta |
105 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||||||||| |||| |
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|
| T |
39911193 |
aggatgatatattactttttttcaagttatatgatcctgaaagaatggagctacggtactgagtaattttcttgtgtgatttttaacatatgttggggta |
39911094 |
T |
|
| Q |
106 |
aaaggtggactttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaatcttaa |
205 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||| ||| |||||| ||||||||| |
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|
| T |
39911093 |
aaagatggaccttagttgacatcaaatgtatttccctttgatggcagttatgttggaaggctccttgtaaactgtactgataagccatcacaaatcttaa |
39910994 |
T |
|
| Q |
206 |
caaagttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggtttgctttgtctg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||| ||||||| |
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|
| T |
39910993 |
caaagttaaataaattggctggttatgatcctgatgaagagattgaactatacgaggttggtttgtgttgtctg |
39910920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 39898409 - 39898165
Alignment:
| Q |
32 |
aagttatatgatcctgaaagagaggagctacggtactgaataatttcttttgtgattt-aacatatgttgcggtaaa--------aggtggactttagtt |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| | ||||||||| |||||||| ||||||| ||| |||||| || ||||| |||||| |
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|
| T |
39898409 |
aagttatatgatcctgaaaaagaggagctatggtacttagtaatttcttgtgtgattttaacatattttggggtaaaggtggacaagatggaccttagtt |
39898310 |
T |
|
| Q |
123 |
gacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaatcttaacaaagttaaataaattg |
222 |
Q |
| |
|
|| ||||||||||||||| || |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
39898309 |
gatatcaaatgtatttccatttgatggcagttatgttggaaggctctttgtgaactgtaccggtaaaccatcagaaatcttaacaagtttaaataatttg |
39898210 |
T |
|
| Q |
223 |
gctggttatgatcctgatgaagatatcgaactttatgaggttggt |
267 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||||| |
|
|
| T |
39898209 |
gctggttttgatcctgatgaagagattgaactttatgaggttggt |
39898165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 39736083 - 39736346
Alignment:
| Q |
18 |
tattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttcttttg-tgattt-aacatatgttgcggtaaaaggtggac |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||| || || |||||| || || ||||| ||| ||||||||| |
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|
| T |
39736083 |
tattactttttttcaagttatatgatcctgaaaaagaagagctgcggtactgaataattttttgtgctgattttaatatttgttggtgtacaaggtggac |
39736182 |
T |
|
| Q |
116 |
tttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaatcttaacaaagttaaa |
215 |
Q |
| |
|
| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||||| | |||| || |||| ||| ||| ||| | |||| |
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|
| T |
39736183 |
ctgagttgacttcaaatgtattttccttctatggcagttatgttggaaggctctttgttaactgttatagtaacccgtcagcaattttagcaaggataaa |
39736282 |
T |
|
| Q |
216 |
taaattggctggttatgatcctgatgaagatatcgaactttatgaggttggtttgctttgtctg |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||||||||||| ||||| ||||||| |
|
|
| T |
39736283 |
taaattggctggttatgatcttgatgaagagattgaactttatgaggttagtttgtgttgtctg |
39736346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 39857653 - 39857385
Alignment:
| Q |
6 |
gagaggatgatttattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttcttttgtgattt-aacatatgttgcggt |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | |||||||||| || ||||| ||||||| || ||||||| | |||||| ||||||||||| ||| |
|
|
| T |
39857653 |
gagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactggatcatttcttgtttgattttaacatatgttgaggt |
39857554 |
T |
|
| Q |
105 |
aaaaggtggactttagttgacatcaaatgtatttccct----tctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaat |
200 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| | ||||||||||| ||||||||| |||| |||||| | ||| |||||||| || |
|
|
| T |
39857553 |
aaaaggtggaccatagttgacatcatatgtatttccctttggtggctggcagttatgttggaaggcttattgtgaactgtaaggataagccatcagatat |
39857454 |
T |
|
| Q |
201 |
cttaacaaagttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggttt |
269 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
39857453 |
cttggcaaggttaaataaattggctggttatgatcctaatgaagagattgaactttatgaggttggttt |
39857385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 37466240 - 37465985
Alignment:
| Q |
9 |
aggatgatttattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttcttttgtgatttaacatatgttgcggtaaaa |
108 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||| |||| |||| | |||||||||| ||| |||| || |
|
|
| T |
37466240 |
aggatgatatattactttttttcaagttatatgatcctgagaaagaggagctacggtact---taatgtcttgatt--tttaacatatattggggtagaa |
37466146 |
T |
|
| Q |
109 |
ggtggactttagttgacatcaaatgtatttcccttctatggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaatcttaacaa |
208 |
Q |
| |
|
| ||||| | |||||||||||||||| |||||||| ||||||||| || ||| || |||||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
37466145 |
gatggacctgagttgacatcaaatgtttttccctttgatggcagttttgttggcagactctttgtgaataacactggtaaaccatcagaaatcttagcaa |
37466046 |
T |
|
| Q |
209 |
agttaaataaattggctggttatgatcctgatgaagatatcgaactttatgaggttggttt |
269 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| || | |||||||||||||||||| |
|
|
| T |
37466045 |
ggttaaataaaatggctggttatgatcctgaagaagagattggactttatgaggttggttt |
37465985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 36059212 - 36059336
Alignment:
| Q |
146 |
atggcagttatgctggaaggctctttgtcgactgtactggtaaaccatcagaaatcttaacaaagttaaataaattggctggttatgatcctgatgaaga |
245 |
Q |
| |
|
||||||| |||| ||||||||||||||| | |||||||| || ||||||||||||||||||| | ||||| || |||||||||||| |||||| ||||| |
|
|
| T |
36059212 |
atggcagctatgttggaaggctctttgtgaagtgtactggcaagccatcagaaatcttaacaaggctaaatgaaatggctggttatgttcctgaagaaga |
36059311 |
T |
|
| Q |
246 |
tatcgaactttatgaggttggtttg |
270 |
Q |
| |
|
||| | ||||||||||||||||||| |
|
|
| T |
36059312 |
tattgtactttatgaggttggtttg |
36059336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 36059083 - 36059151
Alignment:
| Q |
9 |
aggatgatttattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataattt |
77 |
Q |
| |
|
|||| ||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| |||||| |
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|
| T |
36059083 |
aggacgatatattacttttctttaagctatatgatcctgaaaaagaggagcttcggtactgagtaattt |
36059151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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