View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_high_32 (Length: 306)

Name: NF19104_high_32
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_high_32
NF19104_high_32
[»] chr3 (1 HSPs)
chr3 (5-299)||(42835179-42835469)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 42835469 - 42835179
Alignment:
Q  5 aataaccgctatttaataacactttatattaaatggcgtattgtgaaacataagtgattagttcaaattctactacactatatgatctactannnnnnnn 104  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||            
T  42835469 aataaccgctatttaataacactttatattaaatggcatattgcgaaacatcagtgattagttcaaattctactacactaaatgatctactatttttttt 42835370  T
Q  105 nnnnnnnngttgaagaaatatagttctactatttgacaacgctaataaacaactcacattttttgttctcttgatcacctgctctttcaatgatgcttta 204  Q
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42835369 tttt----gttgaagaaatatagttctattatttgacaacgctaataaacaactcacattttttgttctcttgatcacctgctctttcaatgatgcttta 42835274  T
Q  205 agctcacgaatgtatgtctttgtatttgtaatttgatcgtcgcaagagcatatctcaatcttaagcttatcaatcttgacatcggcttcatctct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42835273 agctcacgaatgtatgtctttgtatttgtaatttgatcgtcgcaagagcatatctcaatcttaagcttatcaatcttgacatcggcttcatctct 42835179  T

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