View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_43 (Length: 271)
Name: NF19104_high_43
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 3021309 - 3021447
Alignment:
| Q |
24 |
acttgctcttaagggaaaatcagcttgtcttaattttcctgactctgcatggcggttgaggttgccggagtcgaatgatgcggtggagataaggagagcg |
123 |
Q |
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|||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
3021309 |
acttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcg |
3021408 |
T |
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| Q |
124 |
gcgatggaggcagctcagttgtttgcggttgaggacaag |
162 |
Q |
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| T |
3021409 |
gcgatggaggctgctcagttgtttgcggttgaagacaag |
3021447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 3038178 - 3038316
Alignment:
| Q |
24 |
acttgctcttaagggaaaatcagcttgtcttaattttcctgactctgcatggcggttgaggttgccggagtcgaatgatgcggtggagataaggagagcg |
123 |
Q |
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|||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
3038178 |
acttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcg |
3038277 |
T |
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| Q |
124 |
gcgatggaggcagctcagttgtttgcggttgaggacaag |
162 |
Q |
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| T |
3038278 |
gcgatggaggctgctcagttgtttgcggttgaagacaag |
3038316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 3030523 - 3030633
Alignment:
| Q |
24 |
acttgctcttaagggaaaatcagcttgtcttaattttcctgactctgcatggcggttgaggttgccggagtcgaatgatgcggtggagataaggagagcg |
123 |
Q |
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| T |
3030523 |
acttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttgccggagtcaaatgatgcggtggagataaggagagct |
3030622 |
T |
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| Q |
124 |
gcgatggaggc |
134 |
Q |
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||||||||||| |
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| T |
3030623 |
gcgatggaggc |
3030633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 3021533 - 3021594
Alignment:
| Q |
206 |
catcggaatttgaaggcatgcatgatttgcttctaaaaattgcaaacgagcctttacgttca |
267 |
Q |
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|||| |||||||||| ||||||| |||||||||||| ||||| || ||||||||||||||| |
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| T |
3021533 |
catcagaatttgaagacatgcatcatttgcttctaagtattgccaatgagcctttacgttca |
3021594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 3038402 - 3038463
Alignment:
| Q |
206 |
catcggaatttgaaggcatgcatgatttgcttctaaaaattgcaaacgagcctttacgttca |
267 |
Q |
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| T |
3038402 |
catcagaatttgaagacatgcatcatttgcttctaagtattgccaatgagcctttacgttca |
3038463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 42553727 - 42553687
Alignment:
| Q |
40 |
aaatcagcttgtcttaattttcctgactctgcatggcggtt |
80 |
Q |
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| T |
42553727 |
aaatcagcttgtcttaattttgctgactctgcgtggcggtt |
42553687 |
T |
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