View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_49 (Length: 262)
Name: NF19104_high_49
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8571496 - 8571253
Alignment:
| Q |
1 |
ctacgtgaataagaatcataatgttgttttatctagctttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaat |
100 |
Q |
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| T |
8571496 |
ctacgtgaataagaatcataatgttgttttatttagctttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaat |
8571397 |
T |
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| Q |
101 |
atcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctat |
200 |
Q |
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| T |
8571396 |
atcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctat |
8571297 |
T |
|
| Q |
201 |
tcctcccttgacgttcacgtcggtcaatcatattcagttctagt |
244 |
Q |
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| T |
8571296 |
tcctcccttgacgttcacgtcggtcaatcatactcagttctagt |
8571253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 53750658 - 53750489
Alignment:
| Q |
75 |
acaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaag |
174 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| || |||| || |||||||| || || |||||||| ||||| ||||||||||||||| |
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| T |
53750658 |
acaggaaagacttataggcttaggatatcaaacgtgggattgcaacattcccttaactttcgaattcaaaaccacaaattgaagttggtagaagtggaag |
53750559 |
T |
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| Q |
175 |
gaacacacaccctccaaaccacctattcctcccttgacgttcacgtcggtcaatcatattcagttctagt |
244 |
Q |
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|||||||||| || ||||| || || ||||| ||||| ||||| || || ||||| || ||||| ||||| |
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| T |
53750558 |
gaacacacacacttcaaactacatactcctcacttgatgttcatgtgggacaatcttactcagtgctagt |
53750489 |
T |
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