View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_67 (Length: 237)
Name: NF19104_high_67
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_67 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 11476397 - 11476604
Alignment:
| Q |
15 |
cacagacataagacaattcatttctcttttccacatagctttcttctcaggctttagaggctccaacttcaaattttgtccaaatacagttgctgcaaat |
114 |
Q |
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| T |
11476397 |
cacagacataagacaattcatttctcttttccacatagctttcttctcaggctttagaggctccaacttcaaattttgtccaaatacagttgctgcaaat |
11476496 |
T |
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| Q |
115 |
tcccaaaccaaaatattaaacaaacaaacaaacatattacgtaaacaatcatgttggtcattgaatatgtgaggcgttgtcgctatagtctctgaatgtg |
214 |
Q |
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| T |
11476497 |
tcccaaaccaaaatattaaataaacaaacaaatatattacgtaaacaatcatgttggtcattgaatatgtgaggcgttgtcgctatagtctctgaatgtg |
11476596 |
T |
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| Q |
215 |
ttgaaatt |
222 |
Q |
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|||||||| |
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| T |
11476597 |
ttgaaatt |
11476604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 29298684 - 29298614
Alignment:
| Q |
31 |
ttcatttctcttttccacatagctttcttctcaggctttagaggctccaacttcaaattttgtccaaatac |
101 |
Q |
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|||||||||||||||||||| ||||||||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
29298684 |
ttcatttctcttttccacatgattttcttctcaggcttcagcggctccaactttaagctttgtccgaatac |
29298614 |
T |
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