View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19104_high_72 (Length: 224)
Name: NF19104_high_72
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_72 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 1908859 - 1909064
Alignment:
| Q |
1 |
gcaatacttcacaaagtatccaaggatttttagtgaaatcagttgaaatgattatgcaaatacacttacagagctgaacaataaggaagattatgatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1908859 |
gcaatacttcacaaagtatccaaggatttttagtgaaatcagttgaaatgattatgcaaatacacttacagagctgaacaataaggaagattatgatttt |
1908958 |
T |
|
| Q |
101 |
tcatgaatataaaaccctgaaccttcatgatattgtgttccttcactgaggatataggagcaatcatttaaaatatggttttgttcaagttaggagagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1908959 |
tcatgaatataaaaccctgaaccttcatgatattgtgttccttcacttaggatataggagcaatcatttaaaatatggttttgttcaagttaggagagat |
1909058 |
T |
|
| Q |
201 |
aaggag |
206 |
Q |
| |
|
|||||| |
|
|
| T |
1909059 |
aaggag |
1909064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 8300485 - 8300408
Alignment:
| Q |
104 |
tgaatataaaaccctgaaccttcatgatattgtgttccttcactgaggatataggagcaatcatttaaaatatggttt |
181 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| | || || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
8300485 |
tgaatataaaaccatgaaccttcattatattgtgtactttgtcttgggataaaggagcaatcatttaaattatggttt |
8300408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 4607539 - 4607638
Alignment:
| Q |
94 |
tgatttttcatgaa--tataaaaccctgaaccttcatgatattgtgttccttcactgaggatataggagcaatcatttaaaatatggttttgttcaagtt |
191 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||| | ||||||| |||| || |||||||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
4607539 |
tgatttttcatgaacatataaaaccataaaccttcacaaaattgtgtcccttgtcttaggatataggagaaatcatttaagatatggttttgtgcaagtt |
4607638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University