View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_high_9 (Length: 489)
Name: NF19104_high_9
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 11385088 - 11385427
Alignment:
| Q |
14 |
caaacaaccactcactgcaatattctttaactttttacagattcttctaattgttgactgtgattggtggaatttcttcgattgaaaatccttgaggtta |
113 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
11385088 |
caaacaaccactcactgccatattctttaacattttacagattcttctaattgttgattgtgattggtggaatttctacgattgcaaatccttgaggtta |
11385187 |
T |
|
| Q |
114 |
gggtttgaaaatttgggaaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatttctatgattgtaaatagttaatttggggag |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11385188 |
gggtttgaaaatttggggaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatttctatgattgtaaatagttaatttggggag |
11385287 |
T |
|
| Q |
214 |
gaatttcactttctgaaatcaaggagaggtgtggggttgttgtggtgagaagagagacaagggagaaaagataagtgaagggtttgggaaaaggggatgg |
313 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11385288 |
gaatttcgctttctggaatcaaggagaggtgtggggttgttgtggtgagaagagagacaagggagaaaagataagtgaagggtttgggaaaaggggatgg |
11385387 |
T |
|
| Q |
314 |
cgtctgttgttattatgatgctgggaaaagagttaaatat |
353 |
Q |
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| T |
11385388 |
cgtctgttgttattatgatgttgggaaaagagttaaatat |
11385427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 42128258 - 42128597
Alignment:
| Q |
14 |
caaacaaccactcactgcaatattctttaactttttacagattcttctaattgttgactgtgattggtggaatttcttcgattgaaaatccttgaggtta |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
42128258 |
caaacaaccactcactgccatattctttaactttttacagattcttctaattgttgattgtgattggtggaatttctacgattgcaaatccttgaggtta |
42128357 |
T |
|
| Q |
114 |
gggtttgaaaatttgggaaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatttctatgattgtaaatagttaatttggggag |
213 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42128358 |
gggtttgaaaatttggggaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatgtctatgattgtaaatagttaatttgggg-g |
42128456 |
T |
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| Q |
214 |
gaatttcactttctgaaatcaaggagaggtgtggggttgttgtggtgagaagagagacaagggagaaaagataagtg-aagggtttgggaaaaggggatg |
312 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42128457 |
gaatttcactttctggaatcaaggagaggtgtggggttgttgtggtgagaagagagacaagggagaaaagataagtgaaagggtttgggaaaaggggatg |
42128556 |
T |
|
| Q |
313 |
gcgtctgttgttattatgatgctgggaaaagagttaaatat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42128557 |
gcgtctgttgttattatgatgctgggaaaagagttaaatat |
42128597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 45015913 - 45015675
Alignment:
| Q |
14 |
caaacaaccactcactgcaatattctttaactttttacagattcttctaattgttgactgtgattggtggaatttcttcgattgaaaatccttgaggtta |
113 |
Q |
| |
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|||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
45015913 |
caaacaaccactcattgccatattctttaactctttactgattcttctaattgttgattgtgattggtggaatttcttcgattgcaaatccttgtggtta |
45015814 |
T |
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| Q |
114 |
gggtttgaaaatttgggaaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatttctatgattgtaaatagttaatttggggag |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45015813 |
gggtttgaaaatttggggaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatttctatgattgtaaatagttaatttggggag |
45015714 |
T |
|
| Q |
214 |
gaatttcactttctgaaatcaaggagaggtgtggggttg |
252 |
Q |
| |
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|||||||||| ||| ||||||||||| ||||| ||||| |
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| T |
45015713 |
aaatttcacttactggaatcaaggagatgtgtgaggttg |
45015675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 45015677 - 45015645
Alignment:
| Q |
297 |
ttgggaaaaggggatggcgtctgttgttattat |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
45015677 |
ttgggaaaaggggatggcgtctgttgttattat |
45015645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 6132750 - 6132693
Alignment:
| Q |
245 |
tggggttgttgtggtgagaagagagacaagggagaaaagataagtgaagggtttgggaaa |
304 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| ||||||||||| || | ||||||| |
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| T |
6132750 |
tgggattgttgtggtgagaagagagacgagggag--aagataagtgagggttgtgggaaa |
6132693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 28240228 - 28240459
Alignment:
| Q |
14 |
caaacaaccactcactgcaatattctttaactttttacagattcttctaattgttgactgtgattggtggaatttcttcgattgaaaatccttgaggtta |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||| |
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| T |
28240228 |
caaacaaccactcactgccatattctttaactttttacagattcttctaattgttgattgtgattggtggaatttcttcgatagcatatccttgaggtta |
28240327 |
T |
|
| Q |
114 |
gggtttgaaaatttgggaaaaagttttaaaggttagaatttctatgattgtgattgtaattggttgaatttctatgattgtaaatagttaatttggggag |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
28240328 |
gggtttgaaaatttggggaaaagttttaaaggttagaatttcta------tgattgtcattggttgaatttttatgagtg-aaatagttaatttggggag |
28240420 |
T |
|
| Q |
214 |
gaatttcactttctgaaatcaaggagaggtgtggggttg |
252 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
28240421 |
gaatttcactttctggaatcaaggagaggtgtggggttg |
28240459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 28240457 - 28240511
Alignment:
| Q |
297 |
ttgggaaaaggggatggcgtctgttgttattatgatgctgggaaaagagttaaat |
351 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28240457 |
ttggaaaaaggggatggcgtctgttgttattatgatgctgggaaaagagttaaat |
28240511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 26380512 - 26380569
Alignment:
| Q |
245 |
tggggttgttgtggtgagaagagagacaagggagaaaagataagtgaagggtttgggaaa |
304 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| ||||||||||| || | ||||||| |
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| T |
26380512 |
tgggattgttgtggtgagaagagagacgagggag--aagataagtgagggttgtgggaaa |
26380569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 7224567 - 7224418
Alignment:
| Q |
58 |
ttctaattgttgactgtgattggtggaatttcttcgattgaaaatccttgaggttagggtttgaaaatttgggaaaaagttttaaaggttagaatttcta |
157 |
Q |
| |
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|||||| |||||| |||||||||| |||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| | | |
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| T |
7224567 |
ttctaaatgttgattgtgattggttgaattttgttcattgcaaatccttgaggttagggtttgaaaatttggggttaagttttaaaggctagaattacaa |
7224468 |
T |
|
| Q |
158 |
tgattgtgattgtaattggttgaatttctatgattgtaaatagttaattt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
7224467 |
tgattgtgattgtaattggttgaatttctatgattacaaatagttgattt |
7224418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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