View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_10 (Length: 471)
Name: NF19104_low_10
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 54898303 - 54897899
Alignment:
| Q |
17 |
acttccaagatatttttaaatgggtttaaaaagtgattcatatgatnnnnnnnntggcaaatgacacttaattattgttggagagacaaatgacaacgac |
116 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54898303 |
actttcaagatatttttaaatgggtttaaaaagtgattcatatgatctaaaaaatagcaaatgacacttaattattgttggagagacaaatgacaatgac |
54898204 |
T |
|
| Q |
117 |
agttaagtgtcgtttgaccaacaacaattatgaaataagaaattttagaaataagaatcatttactctataccaaaatacagctaaggtcttcttgttct |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54898203 |
agttaagtgtcgttcgaccaacaacaattatgaaataagaaattttagaaataagaatcatttactctatatcaaaatacagctaaggtcttcttgttc- |
54898105 |
T |
|
| Q |
217 |
gtatgatattagatgaacgtataatnnnnnnngagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttat |
316 |
Q |
| |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54898104 |
gtatgatattagatgaacgtataataaaaaaatagcattgctacgtagtgcgagaaacaatagcacg------acacgaatcatggggtagtggtgttat |
54898011 |
T |
|
| Q |
317 |
aatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcacca |
416 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
54898010 |
aatttcaaaatacataaaagctaaaataatttgcaatctcatgaaggatcctacggcacttattaattcgttgttcctcgtcattagttttgttgcacca |
54897911 |
T |
|
| Q |
417 |
taaagctttttc |
428 |
Q |
| |
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|||| ||||||| |
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| T |
54897910 |
taaaactttttc |
54897899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 42044655 - 42044837
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42044655 |
gagcattgctaggtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaagttaaaataattt |
42044754 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttccat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42044755 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttccat |
42044837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 249 - 430
Target Start/End: Original strand, 43204838 - 43205019
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43204838 |
gagcattgctacatagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaagctaaaataattt |
43204937 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcca |
430 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
43204938 |
gcaatttcatgaaggatcctacggcacttattaattcgttgtttctcgttattagttttgtcgtaccataaagctttttcca |
43205019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 33654079 - 33654261
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||| |||||| |||||||||||| |
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| T |
33654079 |
gagcattgctacgtagtgcgagaaacaatagcacgacatgcacataaattatggggtaatggtgttataatttcaaaatatatgaaagctaaaataattt |
33654178 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttccat |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
33654179 |
gcaatctcatgaaggatcctatgacacttattaattcgttgtttctcgtcattagttttgttgcaccataaagctttttccat |
33654261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 16908210 - 16908029
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
16908210 |
gagcattgctagctagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaagctaaaataattt |
16908111 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcca |
430 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908110 |
gcaatcttatgaaggatcctacggcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcca |
16908029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 5002164 - 5002347
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatg-gggtagtggtgttataatttcaaaatacatgaaaactaaaataatt |
347 |
Q |
| |
|
|||| ||||||| | |||||||||| ||||||||||| ||| ||||||||||| ||||||| | ||||| ||||| ||||||||||| ||||||| | |
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|
| T |
5002164 |
gagctttgccacatggtgcgagaaataatagcacgactggcgcacgaatcatgctggtagtgatattatattttcagaatacatgaaagtcaaaataaat |
5002263 |
T |
|
| Q |
348 |
tgcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttccat |
431 |
Q |
| |
|
| |||||| ||||| ||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
5002264 |
tacaatctaatgaaagatcctatggtgtctattaattcgttgtttctcgttggcagttttgtcgcaccatcaagctttttccat |
5002347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 429
Target Start/End: Complemental strand, 23472364 - 23472185
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| || | |||||||||| || || |||| ||||||| |||||||||| |||||| |||| |||||||| |||| ||| ||||||| | |
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|
| T |
23472364 |
gagcattgctacttggtgcgagaaataacagtgcgactggcacacaaatcatggggcagtggtattattttttcaaaaaacataaaagtcaaaataaact |
23472265 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcc |
429 |
Q |
| |
|
||||||| ||||| |||| || | || |||| ||||||||||| |||| ||| |||||||||| || ||||||||||| |
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|
| T |
23472264 |
gcaatctaatgaaatatccaacggtacctatttattcgttgtttttcgtgggtag-tttgtcgcactatcaagctttttcc |
23472185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 41553100 - 41552988
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| || | |||||||||| || | |||| |||||||||||||||||| |||||| |||| ||||||||||||| ||| ||||||| | |
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|
| T |
41553100 |
gagcattgctacttggtgcgagaaataacactgcgactggcacacgaatcatggggcagtggtattattttttcaaaatacataaaagtcaaaataaact |
41553001 |
T |
|
| Q |
349 |
gcaatctcatgaa |
361 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
41553000 |
gcaatctaatgaa |
41552988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 249 - 429
Target Start/End: Complemental strand, 42667997 - 42667817
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42667997 |
gagcattgctagctagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaagttaaaataattt |
42667898 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcc |
429 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42667897 |
gcaatctcatgaaggattctacggcatttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcc |
42667817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 249 - 429
Target Start/End: Original strand, 29412100 - 29412280
Alignment:
| Q |
249 |
gagcattgccacgtagtgcgagaaacaatagcacgacaggcacacgaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataattt |
348 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
29412100 |
gagcattgctacgtagtgctagaaacaatagctagacaatcacacgaatcatggagtagtggtgttataatttcaaaatacattaaagctaaaataattt |
29412199 |
T |
|
| Q |
349 |
gcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcattagttttgtcgcaccataaagctttttcc |
429 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
29412200 |
gcaatctcatgaaggatcctaaggcgcttattaattcgttgtttctcgtcattagttttgccgcaccataaaactttttcc |
29412280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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