View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19104_low_12 (Length: 442)
Name: NF19104_low_12
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_12 |
 | |
|
| [»] scaffold0450 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 87 - 429
Target Start/End: Complemental strand, 8763244 - 8762902
Alignment:
| Q |
87 |
tattcaagttgttaagaaacaaaaacttgtttggacaccttatctccacaaaatgtttctgcttgctgttaaccaaattggattggaaagtaagtcatct |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763244 |
tattcaagttgttaagaaacaaaaacttgtttggacaccttatctccacaaaatgtttctgcttgctgttaaccaaattggattggaaagtaagtcatct |
8763145 |
T |
|
| Q |
187 |
tttaaaaatatttttcttatgaaaggctttttaattctaatcagttttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763144 |
tttaaaaatatttttcttatgaaaggctttttaaatctaattagttttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaa |
8763045 |
T |
|
| Q |
287 |
agaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaata |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8763044 |
agaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctaaatttacatcatatatttcaata |
8762945 |
T |
|
| Q |
387 |
atattataatatcatcattagcagactgaattataatgttgat |
429 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8762944 |
atattataataacatcattagcagactgaatgataatgttgat |
8762902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 233 - 429
Target Start/End: Complemental strand, 8789577 - 8789384
Alignment:
| Q |
233 |
ttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaaagaaaattctggagatcatgaatataccaaacttgaccagagaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789577 |
ttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaaagaaaattctggagatcatgaatataccaaacttgaccagagaaaa |
8789478 |
T |
|
| Q |
333 |
tgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaataatattataatatcatcattagcagactgaattataatgttgat |
429 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8789477 |
tgtagcaggtcacttacaggtttttcttctcaatttacatcatatatttcaataatattataata---tcattagcagactgaatgataatgttgat |
8789384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 8819 - 8918
Alignment:
| Q |
270 |
ttcagaggctgttccaaagaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaattta |
369 |
Q |
| |
|
|||||| | ||| |||||||||||| ||||||| |||||| | |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
8819 |
ttcagatgttgtgccaaagaaaattttggagataatgaatgttccaaacttaacaagagaaaatgtagccagtcatttacaggtttttcttctcaattta |
8918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University