View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_18 (Length: 403)
Name: NF19104_low_18
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 373
Target Start/End: Complemental strand, 31201164 - 31200797
Alignment:
| Q |
8 |
agagaagaaacagataaaagaagtttgcatccatcaatataatacctgaataattcgtatag---aggctttaggttggcagtcaattccttgtttctcg |
104 |
Q |
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| T |
31201164 |
agagaagaaacagataaaagaagtttgcatccatcaatataatacctgaataattcgtatagtagaggctttaggttggcagtcaattccttgtttctcg |
31201065 |
T |
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| Q |
105 |
agtttttccaatgtagtaacatcgacatgctcaatttcaaacgttaccattacaaacaacgcgcacacacattatttcaattaagtgatacagacataaa |
204 |
Q |
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| T |
31201064 |
agtttttccaatgtagtaacatcgacatgctcaatttcaaacgttaccattacaaacaacgcgcgcacacattatttcaattaagtgatacagacataaa |
31200965 |
T |
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| Q |
205 |
gagaatatgagtcaataaatgacatgattcgaagtaacttgaatgaacctctttgcaaattcctgtactgtggcgatgtcatcaaagcttccaaccatgt |
304 |
Q |
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| T |
31200964 |
gagaatatgagtcaacaaatgacatgattcgaagtaacttgaatgaacctctttgcaaattcctgtactgtggcgatgtcatcaaagcttccaaccatgt |
31200865 |
T |
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| Q |
305 |
gataacatcccgattagcagcttgacaaagcatacgacccaattgtccaccacccaaaaccccaacaac |
373 |
Q |
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| T |
31200864 |
gataacat-ccgattcgcagcttgacaaagcatacgacccaattgcccaccacccaaaaccccaacaac |
31200797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 35857028 - 35857168
Alignment:
| Q |
168 |
cacacacattatttcaattaagtgatacagacata----aagagaatatgagtcaataaatgacatgattcgaagtaacttgaatgaacctctttgcaaa |
263 |
Q |
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| T |
35857028 |
cacacacattatttcaattaagtgatacatacatacataaagagaatatgagt---taaatgacataattcaaagtaacatgaacgaacctctttgcaaa |
35857124 |
T |
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| Q |
264 |
ttcctgtactgtggcgatgtcatcaaagcttccaaccatgtgat |
307 |
Q |
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| T |
35857125 |
ttcctgtactgtggcgctgtcatcaaagcttccaaccatgtgat |
35857168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 35856870 - 35856981
Alignment:
| Q |
42 |
caatataatacctgaataattcgtatag---aggctttaggttggcagtcaattccttgtttctcgagtttttccaatgtagtaacatcgacatgctcaa |
138 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
35856870 |
caatataatacctgaataattcgtatagtagaggctttaggttggcagtcaacaccttgtttctcaagtttttccaatgtagtaacatcgacgtgctcaa |
35856969 |
T |
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| Q |
139 |
tttcaaacgtta |
150 |
Q |
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||||||| |||| |
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| T |
35856970 |
tttcaaatgtta |
35856981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 35857239 - 35857292
Alignment:
| Q |
320 |
agcagcttgacaaagcatacgacccaattgtccaccacccaaaaccccaacaac |
373 |
Q |
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| T |
35857239 |
agcagcttgacaaagcatacggccaagttgacctccacccaaaaccccaacaac |
35857292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 35856063 - 35856099
Alignment:
| Q |
8 |
agagaagaaacagataaaagaagtttgcatccatcaa |
44 |
Q |
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|||||||||||| ||||||||||||||| |||||||| |
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| T |
35856063 |
agagaagaaacaaataaaagaagtttgcgtccatcaa |
35856099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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