View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_19 (Length: 403)
Name: NF19104_low_19
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 43083147 - 43083540
Alignment:
| Q |
1 |
ccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaaaggaaactgctaataatatctttaggatattcattaataaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083147 |
ccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaaaggaaactgctaataatatctttaggatattcattaataaaat |
43083246 |
T |
|
| Q |
101 |
atggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatggttaagagctcgatctcttgctcttttgaattgagaaaattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43083247 |
atggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatggttaagagctcaatctcttgctcttttgaattgagaaaattca |
43083346 |
T |
|
| Q |
201 |
gagaaggaaaaactcatcttgtgtgtaacggnnnnnnnnatagagattagtcacgttaattgataataaaacttagtatatatactatatannnnnnnnn |
300 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083347 |
gagaaggaaaaactcatcttgtgtgtaacaggtttttttatagagattagtcacgttaattgataataaaacttagtatatatactatatatttttggtt |
43083446 |
T |
|
| Q |
301 |
nnnngtaactagtgttcttaggacacttcttatcatctttcatgttttttctacgatttcaaagaatctatacaattatggggtccaatctgtg |
394 |
Q |
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||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
43083447 |
ttttgtaactagtgttcttagcacacttcttatcatcattcatattttttctaggatttcaaagaatctatacaattgtggggtccaatttgtg |
43083540 |
T |
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