View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_2 (Length: 690)
Name: NF19104_low_2
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 24637026 - 24637546
Alignment:
| Q |
14 |
cacagatcacttctttttcggggaatccatataatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24637026 |
cacagatcacttctttttcggggaatccatataatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaa |
24637125 |
T |
|
| Q |
114 |
gcttaggaatccaatttgtgaattattaaaccgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataacaaca |
213 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24637126 |
gcttaggaatccaatttgtgaatcattaaactgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataacaaca |
24637225 |
T |
|
| Q |
214 |
tggatccgagttactgctactataagatttgcaaatgagtacgggaaccatttgaggattcccacaatttatgttcctgcaaaaataaatgagtaatcga |
313 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24637226 |
tggatccgagttactgctactataagatttgcaaacgagtacgggaaccatttgaggattcccacaatttatgttcctgcaaaaataaatgagtaatcga |
24637325 |
T |
|
| Q |
314 |
gtataaaaggaacaatggaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaagtt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24637326 |
gtataaaaggaacaatggaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaattt |
24637425 |
T |
|
| Q |
414 |
aaaacagaaacacgagcagcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaa |
513 |
Q |
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| T |
24637426 |
aaaacagaaacacgagcagcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaa |
24637525 |
T |
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| Q |
514 |
taacagcttgattcctccgac |
534 |
Q |
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||||||||||||||||||||| |
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| T |
24637526 |
taacagcttgattcctccgac |
24637546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 575 - 678
Target Start/End: Original strand, 24637587 - 24637690
Alignment:
| Q |
575 |
cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcaaaacatgttttggagaaaacttatttgatgtcaat |
674 |
Q |
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| T |
24637587 |
cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcagaacatgttttggagaaaacttatttgatgtcaat |
24637686 |
T |
|
| Q |
675 |
attg |
678 |
Q |
| |
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|||| |
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| T |
24637687 |
attg |
24637690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 216 - 423
Target Start/End: Original strand, 24715794 - 24716010
Alignment:
| Q |
216 |
gatccgagttactgctactataagatttgcaaa-tgagtacgggaaccatttgagga-------------ttcccacaatttatgttcctgcaaaaataa |
301 |
Q |
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|||||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||| ||| || |||||| || |
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| T |
24715794 |
gatccgagctaccgctactataagatttgcaaactgagtacaggaaccatttgaggacaaaatttgaggcttcccacaagttaagttactacaaaaaaaa |
24715893 |
T |
|
| Q |
302 |
atgagtaatcgagtataaaaggaacaatggaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatc |
401 |
Q |
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| ||| ||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| | |
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| T |
24715894 |
a-----aattgagtataaaagcaataatggaaccatgcataacattaaaatgagcaagggatacataaaacaaataggcaccgcaattttttaaggaacc |
24715988 |
T |
|
| Q |
402 |
caaaagtaagttaaaacagaaa |
423 |
Q |
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||||| ||| |||||||||||| |
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| T |
24715989 |
caaaactaatttaaaacagaaa |
24716010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 575 - 678
Target Start/End: Original strand, 24716218 - 24716321
Alignment:
| Q |
575 |
cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcaaaacatgttttggagaaaacttatttgatgtcaat |
674 |
Q |
| |
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|||| ||| |||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||| |||||||| |||||||| ||||||||| ||||| |
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| T |
24716218 |
cttctactcatgcacaaattttatgtgaaatatcacacccgaaatagatgtttttacaaacatcagaacatgttctggagaaagtttatttgatatcaat |
24716317 |
T |
|
| Q |
675 |
attg |
678 |
Q |
| |
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|||| |
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| T |
24716318 |
attg |
24716321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 24715589 - 24715669
Alignment:
| Q |
34 |
gggaatccatataatttaaacatgacca-aaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaa |
113 |
Q |
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||||||||||||||||||||| |||| | |||||||||||| |||| |||||| ||||||||||||| ||||||| ||||| |
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| T |
24715589 |
gggaatccatataatttaaacttgacaataaaaactaatttcatttcgaaattgaaaaatcatgtttctttttctcacaaa |
24715669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 24632253 - 24632314
Alignment:
| Q |
312 |
gagtataaaaggaacaatggaaccttgcataacattaaaatgaacaagggatacataaaaca |
373 |
Q |
| |
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||||||||| |||||| ||||||| ||||||||| |||||||||| | |||||||||||| |
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| T |
24632253 |
gagtataaacggaacagcagaaccttacataacattgaaatgaacaatgcatacataaaaca |
24632314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 531
Target Start/End: Original strand, 24716115 - 24716171
Alignment:
| Q |
470 |
aaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctcc |
531 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
24716115 |
aaattatgtttcagattcctttcaatcat-----ttataggaaataacagattgattcctcc |
24716171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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