View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_20 (Length: 402)
Name: NF19104_low_20
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 30943851 - 30943760
Alignment:
| Q |
4 |
gagaaacataataggaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatagttg |
95 |
Q |
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| T |
30943851 |
gagaaatacaatagaaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcagctgcttacctgcgatagttg |
30943760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 30954279 - 30954205
Alignment:
| Q |
19 |
aaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatagt |
93 |
Q |
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| T |
30954279 |
aaattagattatagatgtatcacctagaatgattttcattttcccttgccaactcaaatgcttatctgcgatagt |
30954205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 31223063 - 31222979
Alignment:
| Q |
2 |
gagagaaacataataggaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctg |
86 |
Q |
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| T |
31223063 |
gagagaaataaaatagaaatttatatcatagatgtatcacctagaatgattttcattttcccttgcctgctcaactgcttacctg |
31222979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 30959938 - 30959862
Alignment:
| Q |
19 |
aaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatagttg |
95 |
Q |
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| T |
30959938 |
aaattagactgtagttgtattacctagaatgattttcattttcccttgccaactcatttgcttacctgcgatagttg |
30959862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 30943686 - 30943646
Alignment:
| Q |
165 |
ctaataggtaagctgcatatgattggctaaagaagttggga |
205 |
Q |
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| T |
30943686 |
ctaataggtaagctgcatatgattggctaaagaagttggga |
30943646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 31213467 - 31213424
Alignment:
| Q |
50 |
attttcattttccctttccagctcaactgcttacctgcgatagt |
93 |
Q |
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| T |
31213467 |
attttcattttcccttgccagctcaactccttacctgcgatagt |
31213424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 31229090 - 31229037
Alignment:
| Q |
40 |
acctagaatgattttcattttccctttccagctcaactgcttacctgcgatagt |
93 |
Q |
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| T |
31229090 |
accttgaatgattttccttttctcttgccagctcaaatgcttacctgtgatagt |
31229037 |
T |
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