View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_21 (Length: 391)
Name: NF19104_low_21
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 2058436 - 2058811
Alignment:
| Q |
1 |
ctcattcaacatccaactcattcctacggtatttatttagaaatttggtctataaaagaagtcatgtgatcctagttaattaactttataatttgaaatt |
100 |
Q |
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| T |
2058436 |
ctcattcaacatccaactcattcctacggtatttatttagaaatttggtctataaaagaagtcatgtgatcctagttaa----ctttataatttgaaatt |
2058531 |
T |
|
| Q |
101 |
agatatacacaatctaaatgttccaccttgaattaaaaatcagcatcctacatcacttattatatgaatattttaattacatgcaaagattaggtgcatt |
200 |
Q |
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| T |
2058532 |
agatatacacaatctaaatgttccaccttgaattaaaaatcagcatcctacatcacttattatatgaatactttaataacatgcaaagattacgtgcatt |
2058631 |
T |
|
| Q |
201 |
atatcatcatgctatttttatgaatatttacatgcaagtataactagcttattatcnnnnnnnnnnnnnnnnagattacaactccctcttttaattatat |
300 |
Q |
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| T |
2058632 |
atatcatcatgctatttttatgaatatttacatgcaagtataactagcttattatctttttgtttttattttagattacaactccctcttttaattatat |
2058731 |
T |
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| Q |
301 |
ggtatttgctttgtggaaaatcaaataaaccaaagttggaggttgaaaacatttacagtggtccatgctacattgttcat |
380 |
Q |
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| T |
2058732 |
ggtatttgctttgtggaaaatcaaataaaccaaagttggaggttgaaaacatttacagtggtccatgctacattgttcat |
2058811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 2048710 - 2048772
Alignment:
| Q |
301 |
ggtatttgctttgtggaaaa-tcaaataaaccaaagttggaggttgaaaacatttacagtggt |
362 |
Q |
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| T |
2048710 |
ggtatttgctttgtggaaaactcaaataaacaaaagttggaggttggaaaaacttacagtggt |
2048772 |
T |
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