View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_22 (Length: 383)
Name: NF19104_low_22
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 40446343 - 40445988
Alignment:
| Q |
11 |
cagagagaccaaatacagtccaactgacaggtaggatgtgggctagacttcttgaatcgacaaatcaaccaagttttgtttcctctgaccaacaaagagt |
110 |
Q |
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| T |
40446343 |
cagagagaccaaatacagtccaactgacaggtaggatgtgggctagacttcttgaatcgacaaatcaaccaagttttgtttcctctgaccaacaaagagt |
40446244 |
T |
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| Q |
111 |
tgagaaggagatggtcgaagatacaaataagatgaatattacctctatataatctaggttcaatagtgtgtattaagtattaactgttgctgcacatcga |
210 |
Q |
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| T |
40446243 |
tgagaaggagatggtcgaagatacaaataagatgaatattacttctatataatctaggttcaatagtgtgtattaagtattaactgttgctgcacatcga |
40446144 |
T |
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| Q |
211 |
ttagccttttgtgttatcctgttcttttttatatttctgttgggaaagttagaatatggtagatttatgtacgagcataatttgggtactactatgcccg |
310 |
Q |
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| T |
40446143 |
ttagccttttgtgttatcctgttcttttttatatttctgttgggaaagttagaatatggtagatttatgtacgagcataatttgggtactactatgcctg |
40446044 |
T |
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| Q |
311 |
taaaacatcagannnnnnngttgctcaatttattaatacatacagaggtttttact |
366 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40446043 |
taaaccatcagatttttttgttgctcaatttattaatacatacagaggtttttact |
40445988 |
T |
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