View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_low_23 (Length: 372)

Name: NF19104_low_23
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_low_23
NF19104_low_23
[»] chr4 (9 HSPs)
chr4 (16-355)||(31157326-31157665)
chr4 (24-182)||(31017839-31017997)
chr4 (20-147)||(31027895-31028022)
chr4 (13-338)||(31148429-31148766)
chr4 (20-95)||(31032510-31032585)
chr4 (272-347)||(31526524-31526599)
chr4 (20-92)||(31498675-31498747)
chr4 (251-355)||(31498843-31498947)
chr4 (278-355)||(31478815-31478892)
[»] scaffold1408 (1 HSPs)
scaffold1408 (261-354)||(757-850)
[»] scaffold0428 (1 HSPs)
scaffold0428 (261-354)||(6503-6596)
[»] chr6 (14 HSPs)
chr6 (274-354)||(33271935-33272015)
chr6 (260-354)||(33644344-33644438)
chr6 (261-354)||(33057679-33057772)
chr6 (277-354)||(33358977-33359054)
chr6 (301-354)||(28870014-28870067)
chr6 (301-354)||(33262736-33262789)
chr6 (301-354)||(33399164-33399217)
chr6 (301-353)||(33285729-33285781)
chr6 (23-95)||(33304859-33304931)
chr6 (301-348)||(31562666-31562713)
chr6 (300-354)||(33388270-33388324)
chr6 (22-95)||(9167148-9167221)
chr6 (58-95)||(33272179-33272216)
chr6 (301-354)||(33304594-33304647)
[»] chr7 (1 HSPs)
chr7 (305-352)||(6785236-6785283)
[»] chr2 (1 HSPs)
chr2 (219-354)||(17440643-17440778)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 31157665 - 31157326
Alignment:
Q  16 atacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31157665 atacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattt 31157566  T
Q  116 tatttcattcccaatcaacaacttcccccttgaaatggaccacaattggtttgcattccttgtatcatgaagttttaactagttgtttgctaccttcttt 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31157565 tatttcattcccaatcaacaacttcctccttgaaatggaccacaattggtttgcattccttgtatcatgaagttttaactagttgtttgctaccttcttt 31157466  T
Q  216 tcttagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31157465 tcttagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaat 31157366  T
Q  316 ataggggggaacaattttgtgacactgcctagcctgaggg 355  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31157365 ataggggggaacaattttgtgacactgcctagcctgaggg 31157326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 31017997 - 31017839
Alignment:
Q  24 tctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattttatttcat 123  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| | | || | |||    
T  31017997 tctcacctctcttaaatatctaaatctttctgggtgttccaaagtgtttaactatccaaagcatttgaagaaacttgattcgagtgaaactgtactacat 31017898  T
Q  124 tcccaatcaacaacttcccccttgaaatggaccacaattggtttgcattccttgtatca 182  Q
    |||||||||| ||||||| |||||| || |||||| |||||||| ||||||||||||||    
T  31017897 tcccaatcaaaaacttcctccttgatattgaccacgattggtttacattccttgtatca 31017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 31028022 - 31027895
Alignment:
Q  20 ttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatattttatt 119  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||| ||| ||||    
T  31028022 ttggtctcacctctcttaaatatctaaatctttcctggtgttccaaagtgtttaccaatacaaggcatttgaataaacttgattcgagtgaaattgtatt 31027923  T
Q  120 tcattcccaatcaacaacttcccccttg 147  Q
     |||||||| |||||||||||| |||||    
T  31027922 acattcccagtcaacaacttcctccttg 31027895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 31148766 - 31148429
Alignment:
Q  13 aatatacttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgata 112  Q
    |||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||| |||| |||   |||||| ||||| |    
T  31148766 aatatatttggtctcagctctcttgaatgtctaaatctttcggggtgttccaaagtgtttaagaatccaaggcaattgaggaagcatgattcaagtgaaa 31148667  T
Q  113 ttttatttcattcccaatcaacaacttcccc---cttgaaatggaccacaattggtttgcattccttgtatc---atg------aagttttaactagttg 200  Q
     || ||  ||||  ||||||||||||||| |   ||| ||||||||||  |||  ||| |||||||||||||   |||      ||| | || ||||| |    
T  31148666 gttcatcacattttcaatcaacaacttcctcaatcttaaaatggaccaggattcatttccattccttgtatccctatgcacacaaagatatagctagtcg 31148567  T
Q  201 tttgctaccttcttttcttagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcga 300  Q
    ||| || | ||| || |||||| |||  ||||||| |||  ||||||| ||||| |||||| ||||| | || ||  ||||||||||| || ||| | |     
T  31148566 ttttctgcattccttgcttagcttatcttgtttgaatgatcttgatattagtttttgtggtataagccaactaccgaatgcaattggacgtttacgttgg 31148467  T
Q  301 ctagaaagattaaatataggggggaacaattttgtgac 338  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  31148466 ctagaaagattaaatctagggggaaacaattttgtgac 31148429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 31032585 - 31032510
Alignment:
Q  20 ttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  31032585 ttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaatgcaattgaagaa 31032510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 31526599 - 31526524
Alignment:
Q  272 tccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctag 347  Q
    |||||||||| ||||| || |||||| |  |||||||||||||| ||||||| ||||||||||||||| |||||||    
T  31526599 tccctgatgctattggttgcctactttggttagaaagattaaatttagggggaaacaattttgtgacattgcctag 31526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31498675 - 31498747
Alignment:
Q  20 ttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaa 92  Q
    |||||||||||| ||||||| |||||||| | |  ||||||||| |||||||||||| |||| || |||||||    
T  31498675 ttggtctcagctttcttaaagatctaaatatgtgtgggtgttccgaagtgtttaacattccatgggatttgaa 31498747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 31498843 - 31498947
Alignment:
Q  251 gtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcct 350  Q
    |||| |||||||||| | | ||||| ||||||||||||||| ||| | |  |||||   |||||| ||||||| ||||| ||||||||| | ||||||||    
T  31498843 gtttttgtggtctaaaccaactccccgatgcaattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcct 31498942  T
Q  351 gaggg 355  Q
    |||||    
T  31498943 gaggg 31498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 31478815 - 31478892
Alignment:
Q  278 atgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgaggg 355  Q
    |||||||||||||||||  | |  |||||  ||||||| ||||||| ||||||||||||||| | ||||| |||||||    
T  31478815 atgcaattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgaggg 31478892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 850 - 757
Alignment:
Q  261 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||| || | ||||||||||||| |||| ||| ||| ||||||||||||||| ||||||| || |||||||||||||| |||||| |||||    
T  850 tctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaataattttgtgacactacctagcatgagg 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 6596 - 6503
Alignment:
Q  261 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||| || | ||||||||||||| |||| ||| ||| ||||||||||||||| ||||||| || |||||||||||||| |||||| |||||    
T  6596 tctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaataattttgtgacactacctagcatgagg 6503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 33272015 - 33271935
Alignment:
Q  274 cctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||| |||| ||| | | |||||||||||| || ||||||| ||||||||||||||||| ||||||||||||    
T  33272015 cctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacactacctagcctgagg 33271935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 33644344 - 33644438
Alignment:
Q  260 gtctaagctatctccctgatgcaattggatgtctac-ttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    |||||||| || | |||||| |||||| |||| ||| |||| ||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  33644344 gtctaagccatgttcctgattcaattgaatgtttacattcg-ctagaaagattaaatttagggggaaactattttgtgacactacctagcctgagg 33644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 33057772 - 33057679
Alignment:
Q  261 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||| || | ||||||||||||| |||| ||| | | ||||||||||||||| ||| ||| ||| ||||||||||| | ||||||||||||    
T  33057772 tctaagccatgtgcctgatgcaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgagg 33057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 33359054 - 33358977
Alignment:
Q  277 gatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    |||||||||| |||| ||| | | ||||||| ||||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  33359054 gatgcaattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgagg 33358977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 28870014 - 28870067
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||  || |||| ||| ||||||||||||||||||||||||||    
T  28870014 ctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgagg 28870067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 33262789 - 33262736
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||| ||||||| ||  ||||||||||||| ||||||||||||    
T  33262789 ctagaaagattaaatttagggggaaatgattttgtgacactacctagcctgagg 33262736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 33399217 - 33399164
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||| ||  ||| ||||||||||||||||| ||||||||||||    
T  33399217 ctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgagg 33399164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 33285781 - 33285729
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgag 353  Q
    ||||||| ||||||  ||||||| ||||||||||||||||| |||||||||||    
T  33285781 ctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgag 33285729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 33304931 - 33304859
Alignment:
Q  23 gtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    |||| ||||||||| || |||||||| | |  || ||||||||||||||||| ||||||| ||||||||||||    
T  33304931 gtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaa 33304859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 31562666 - 31562713
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagc 348  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| ||||||    
T  31562666 ctagaaagattaaatttagggggaaactattttgtgacactacctagc 31562713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 33388324 - 33388270
Alignment:
Q  300 actagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    |||||||| ||||||| ||||||| ||| ||||||||||||| |||||| |||||    
T  33388324 actagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgagg 33388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 9167221 - 9167148
Alignment:
Q  22 ggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    ||||| |||||||||||| |||||||| | |  || ||||||||| ||||| || || ||||||||||||||||    
T  9167221 ggtcttagctctcttaaagatctaaatatgtgtggctgttccaaattgtttgacgattcaaggcatttgaagaa 9167148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 33272216 - 33272179
Alignment:
Q  58 tgttccaaagtgtttaacaatccaaggcatttgaagaa 95  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  33272216 tgttctaaagtgtttaacaatccaatgcatttgaagaa 33272179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 33304647 - 33304594
Alignment:
Q  301 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||||||||||||  ||| ||| |||||||||||||| || ||||||||||||    
T  33304647 ctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgagg 33304594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 6785236 - 6785283
Alignment:
Q  305 aaagattaaatataggggggaacaattttgtgacactgcctagcctga 352  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||||||||||    
T  6785236 aaagattaaatttagggggaaaccattttgtgacattgcctagcctga 6785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 17440643 - 17440778
Alignment:
Q  219 tagcatatactgtttgagtgaagttgatatcagtttctgtggtctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatata 318  Q
    |||| |||| |||||| |||||||||| || ||||| ||  |||||||| |  | || ||| |||||| |||| ||| | |  |||||||||||||| ||    
T  17440643 tagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaaattta 17440742  T
Q  319 ggggggaacaattttgtgacactgcctagcctgagg 354  Q
    ||||| ||  |||||| |||||| ||||||||||||    
T  17440743 gggggaaatgattttgcgacactacctagcctgagg 17440778  T

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