View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_28 (Length: 351)
Name: NF19104_low_28
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 41710922 - 41710593
Alignment:
| Q |
1 |
cgtgcttatcttttgaatacgtataataactttcataagtcatcctattaagcacgcgggaaattaatcaatatggaaaaaattccacaagccattgcga |
100 |
Q |
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| T |
41710922 |
cgtgcttatcttttgaatacgtgtaa--actttcataagtcatcccattaagcacgcgggaaattaatcaatatggaaaaaattccacaagccattgcga |
41710825 |
T |
|
| Q |
101 |
tcatgacttaaatagaaagacacttgttagaaagacaaaagtgaagtaattttcttgttaattcattcctctaaaatagtgttgctactagtggatgaat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41710824 |
tcatgacttagatagaaagacacttgttagaaagacaaaagtgaaataattttcttgttaattcattcctctaaaatagtgttgctactagtggatgaat |
41710725 |
T |
|
| Q |
201 |
ggacaacacactattagaaggacagtgactgtaaccgtaatcaaatattggggatcaaccgtagatgtaaccgtcactggagctagaagtagtgagaatt |
300 |
Q |
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| T |
41710724 |
ggacaacacactattagaaggacagtgactgtaaccgtaatcaaatattggggatcaaccgtagatgtaaccgtcactggagctggaagtagtgagaatt |
41710625 |
T |
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| Q |
301 |
gagaccataatgtttgaatcctcactgtttcc |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41710624 |
gagaccataatgtttgaatcctcactgtttcc |
41710593 |
T |
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