View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_29 (Length: 333)
Name: NF19104_low_29
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 1792033 - 1792321
Alignment:
| Q |
16 |
cagaagcattgtcactcgtggatcgtggaaaatagcgatttgtttaaattacacccatttcacaatattatgtactaatcgcaaaacaatagcgatttgt |
115 |
Q |
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| T |
1792033 |
cagaagcattgtcaatcgtggatcgtggaaaatagcgatttgtttaaattacacccatttcaaaatattatgtactaatcgcaaaacaatagcgatttgt |
1792132 |
T |
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| Q |
116 |
tcaaattctgctttgacatagtgctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttatttcaatatttgattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792133 |
tcaaattctgctttgacatagtgctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttatttcaatatttgattc |
1792232 |
T |
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| Q |
216 |
gtaggtttactggcattttaaatgtcgctgtattattgttgctattgatgtatcattagtgttccttatccccttaatattagtatatg |
304 |
Q |
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| T |
1792233 |
gtaggtttactggcattttaaatgtcgctgtattattgttgctattgatgtatcattagtgttccttatccccttaatattagtatatg |
1792321 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 37538448 - 37538416
Alignment:
| Q |
95 |
cgcaaaacaatagcgatttgttcaaattctgct |
127 |
Q |
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| T |
37538448 |
cgcaaaacaatagcgatttgttcaaattctgct |
37538416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 2732965 - 2732936
Alignment:
| Q |
93 |
atcgcaaaacaatagcgatttgttcaaatt |
122 |
Q |
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| T |
2732965 |
atcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 33390657 - 33390686
Alignment:
| Q |
98 |
aaaacaatagcgatttgttcaaattctgct |
127 |
Q |
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| T |
33390657 |
aaaacaatagcgatttgttcaaattctgct |
33390686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 28804359 - 28804331
Alignment:
| Q |
99 |
aaacaatagcgatttgttcaaattctgct |
127 |
Q |
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| T |
28804359 |
aaacaatagcgatttgttcaaattctgct |
28804331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 33044004 - 33044032
Alignment:
| Q |
99 |
aaacaatagcgatttgttcaaattctgct |
127 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33044004 |
aaacaatagcgatttgttcaaattctgct |
33044032 |
T |
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