View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_low_3 (Length: 687)

Name: NF19104_low_3
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_low_3
NF19104_low_3
[»] chr7 (22 HSPs)
chr7 (82-677)||(46478703-46479316)
chr7 (223-677)||(46520292-46520746)
chr7 (222-677)||(46490063-46490518)
chr7 (203-680)||(46494342-46494819)
chr7 (216-680)||(46516644-46517108)
chr7 (321-677)||(46532009-46532365)
chr7 (321-677)||(46524456-46524812)
chr7 (221-680)||(46322744-46323203)
chr7 (325-674)||(46326455-46326804)
chr7 (325-473)||(46464839-46464985)
chr7 (20-78)||(6392363-6392421)
chr7 (20-78)||(29737497-29737555)
chr7 (20-78)||(40232265-40232323)
chr7 (19-78)||(4041038-4041097)
chr7 (20-78)||(24300294-24300352)
chr7 (20-78)||(41427798-41427856)
chr7 (20-90)||(27596224-27596293)
chr7 (20-78)||(38276695-38276753)
chr7 (21-78)||(48838153-48838210)
chr7 (20-78)||(25943797-25943853)
chr7 (20-78)||(31689503-31689561)
chr7 (21-74)||(21442952-21443005)
[»] chr3 (11 HSPs)
chr3 (325-575)||(7475308-7475558)
chr3 (21-90)||(48737619-48737688)
chr3 (20-78)||(40496865-40496923)
chr3 (20-78)||(41346139-41346197)
chr3 (20-78)||(51545754-51545812)
chr3 (20-78)||(54014329-54014387)
chr3 (20-78)||(48169816-48169874)
chr3 (20-78)||(50676567-50676624)
chr3 (20-63)||(12568173-12568216)
chr3 (20-63)||(13544637-13544680)
chr3 (20-78)||(24709102-24709160)
[»] chr8 (9 HSPs)
chr8 (20-90)||(38070033-38070103)
chr8 (20-90)||(11254592-11254662)
chr8 (20-82)||(17493618-17493680)
chr8 (30-90)||(18575130-18575190)
chr8 (20-78)||(27820865-27820923)
chr8 (21-78)||(12738516-12738573)
chr8 (20-77)||(17336121-17336178)
chr8 (20-78)||(39907002-39907058)
chr8 (25-90)||(13243684-13243749)
[»] chr5 (4 HSPs)
chr5 (20-90)||(36982278-36982348)
chr5 (20-82)||(14044148-14044210)
chr5 (20-78)||(42897524-42897582)
chr5 (21-78)||(2970815-2970871)
[»] scaffold0519 (1 HSPs)
scaffold0519 (20-90)||(10731-10801)
[»] chr6 (10 HSPs)
chr6 (20-90)||(28541725-28541795)
chr6 (20-90)||(13042064-13042134)
chr6 (20-74)||(7271232-7271286)
chr6 (20-90)||(29182683-29182753)
chr6 (21-78)||(13210437-13210494)
chr6 (20-78)||(1241201-1241259)
chr6 (20-78)||(16435871-16435929)
chr6 (20-78)||(30736511-30736569)
chr6 (21-78)||(1870627-1870684)
chr6 (20-70)||(12350364-12350414)
[»] chr2 (11 HSPs)
chr2 (20-90)||(45080556-45080626)
chr2 (20-78)||(2110312-2110370)
chr2 (20-78)||(28585833-28585891)
chr2 (20-90)||(29194080-29194150)
chr2 (20-78)||(43370766-43370824)
chr2 (20-74)||(1779226-1779280)
chr2 (21-78)||(4828239-4828296)
chr2 (21-78)||(39646476-39646533)
chr2 (20-78)||(8381466-8381524)
chr2 (21-90)||(42847045-42847114)
chr2 (30-78)||(43377356-43377404)
[»] chr4 (20 HSPs)
chr4 (20-78)||(925286-925344)
chr4 (20-90)||(20789765-20789835)
chr4 (20-78)||(39788085-39788143)
chr4 (20-78)||(40071599-40071657)
chr4 (20-90)||(47199578-47199648)
chr4 (20-78)||(54438307-54438365)
chr4 (20-84)||(17493845-17493909)
chr4 (20-84)||(52101140-52101204)
chr4 (20-78)||(21240418-21240476)
chr4 (20-78)||(32218087-32218145)
chr4 (21-78)||(37064903-37064960)
chr4 (358-680)||(88038-88357)
chr4 (20-90)||(34408795-34408865)
chr4 (21-78)||(46870700-46870757)
chr4 (30-90)||(53509780-53509840)
chr4 (20-78)||(33800933-33800990)
chr4 (21-78)||(3172169-3172226)
chr4 (21-78)||(28910306-28910363)
chr4 (20-55)||(51744657-51744692)
chr4 (559-596)||(49833648-49833685)
[»] chr1 (13 HSPs)
chr1 (20-78)||(32045925-32045983)
chr1 (20-78)||(46862648-46862706)
chr1 (358-680)||(37151873-37152192)
chr1 (20-83)||(1929361-1929424)
chr1 (20-78)||(28036851-28036909)
chr1 (20-78)||(38321737-38321795)
chr1 (20-78)||(39151047-39151105)
chr1 (20-78)||(50777089-50777147)
chr1 (21-71)||(8229156-8229206)
chr1 (21-78)||(38817867-38817924)
chr1 (21-78)||(46371020-46371076)
chr1 (21-78)||(9129552-9129609)
chr1 (21-78)||(40562584-40562641)
[»] scaffold0318 (1 HSPs)
scaffold0318 (20-78)||(16449-16507)
[»] scaffold0061 (1 HSPs)
scaffold0061 (20-78)||(10167-10225)
[»] scaffold1194 (1 HSPs)
scaffold1194 (21-77)||(1072-1128)
[»] scaffold0532 (1 HSPs)
scaffold0532 (20-78)||(3906-3964)
[»] scaffold0047 (1 HSPs)
scaffold0047 (20-78)||(69845-69903)


Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 82 - 677
Target Start/End: Original strand, 46478703 - 46479316
Alignment:
Q  82 aattatcatctaccatgtatacaagttaaaatcatgtgtttaatta----------cagattcaaaggggagtaataattcaagcagaaatttgtg--ga 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||  ||    
T  46478703 aattatcatctaccatgtatacaagttaaaatcatgtgtttaattaggaacgtagacagattcaaaggggagtaataattcaagcagaaatttgtgcaga 46478802  T
Q  170 aacacatctgtaactgattcgtagcatataa------gaataagaatataagaaaacgaacctggaatctgcagatatagtaatcatctccaaacaaagc 263  Q
    |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46478803 aacacatctgtaactgattcgtagcatataagaataagaataagaatataagaaaacgaacctggaatctgcagatatagtaatcatctccaaacaaagc 46478902  T
Q  264 tcgcatgccatcaactggtttcactttggggtttctgggtaaatacggcacactcaaacagacataagctttgattttttcagggcgaaataaacaaaga 363  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46478903 tcgcatgccatcaactggtttcattttggggtttctgggtaaatacggcacactcaaacaaacataagctttgattttttcagggcgaaataaacaaaga 46479002  T
Q  364 taccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagtggaaga 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479003 taccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagtggaaga 46479102  T
Q  464 ttgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctg 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46479103 ttgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctg 46479202  T
Q  564 gtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcact 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479203 gtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcact 46479302  T
Q  664 tccaccgttctgtg 677  Q
    ||||||||||||||    
T  46479303 tccaccgttctgtg 46479316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 223 - 677
Target Start/End: Original strand, 46520292 - 46520746
Alignment:
Q  223 acctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttct--gggtaaatacggcacactcaa 320  Q
    ||||| |||||||||||||| ||||| |||||| |   ||| ||| | |||||||  || |||||| ||||||||||  || |||||  || ||||| |     
T  46520292 acctgaaatctgcagatataataatcgtctccataagcagcacgcctaccatcaataggcttcactgtggggtttctatggttaaat--ggaacactaag 46520389  T
Q  321 acagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccg 420  Q
    ||| ||||| ||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520390 acaaacataggctttgattctttcagggcgaaacatgcaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccg 46520489  T
Q  421 agtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctg 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520490 agtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctg 46520589  T
Q  521 gagcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggacc 620  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520590 gagcaacagcacggtaaccgagggagccaagagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggacc 46520689  T
Q  621 ttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtg 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520690 ttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtg 46520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 222 - 677
Target Start/End: Original strand, 46490063 - 46490518
Alignment:
Q  222 aacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttctgggtaaatacggcacactcaaa 321  Q
    ||||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||| |    
T  46490063 aacctggaatctgcagatataataatcatcaccatacacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaatacggaacactcaga 46490162  T
Q  322 cagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccga 421  Q
    || || || ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |    
T  46490163 cacacgtaggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaacgccaa 46490262  T
Q  422 gtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctgg 521  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || || || || ||||||||||||||||| || ||||| ||||||||    
T  46490263 gtgagtcgatgagagcaacgatgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctgg 46490362  T
Q  522 agcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggacct 621  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| || |||    
T  46490363 agcaacagcgcggtaaccgagggagccaagagcagaaatctggtggcgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtcct 46490462  T
Q  622 tcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtg 677  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  46490463 tctttacctttctcagcaatatgcattttgatgccattcacttccactgttctgtg 46490518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 203 - 680
Target Start/End: Original strand, 46494342 - 46494819
Alignment:
Q  203 ataagaatataagaaaacgaacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttctggg 302  Q
    |||| |||||| |||  ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46494342 ataaaaatatatgaattcgaacctggaatctgcagatataatagtcatctccaaataaagctcgcatgccatcaactggtttcactttggggtttctggg 46494441  T
Q  303 taaatacggcacactcaaacagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaagg 402  Q
    ||||||||||||||| | ||| ||||| ||||| | | | ||||||||||| || ||||||||||||||||  |||||||||||||||||||| ||||||    
T  46494442 taaatacggcacactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaagg 46494541  T
Q  403 aacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgc 502  Q
    || ||||| ||||| || || ||||||||||| ||||| || ||||| ||||||||||||||||| || ||| |||  |||  |||  |||| || ||||    
T  46494542 aagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtatcgc 46494641  T
Q  503 cgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaag 602  Q
    | || ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  46494642 cataaccacgaagatcgggagccacagcccggtaaccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaag 46494741  T
Q  603 gaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtgctc 680  Q
    |||||  ||||| || |||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||    
T  46494742 gaacaggacaacaggtccttcttttcctttttcagcaatatgcattttgattccattcacttccactgttctgtgctc 46494819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 216 - 680
Target Start/End: Original strand, 46516644 - 46517108
Alignment:
Q  216 aaaacgaacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttctgggtaaatacggcaca 315  Q
    ||||| ||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||| ||||| |||||||||||||| |||||  | || |||    
T  46516644 aaaacaaacctggaatctgcagatataataatcgtcaccaaacaaagcttgcatgccatcaacaggttttactttggggtttcttggtaacaatggaaca 46516743  T
Q  316 ctcaaacagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaa 415  Q
    || |  || |||||||| |||| ||| ||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |    
T  46516744 ctgaggcaaacataagccttgactttctcaggacgaaacaaacaaagataccaaccaatgatagcaccccaatcatgagccacaaggaaaacttggtcca 46516843  T
Q  416 cgccgagtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaag 515  Q
    | || |||||||| || ||||||||||||||||| ||||| || || ||||||||||| || | ||||| ||||||||| ||||| ||||||||||  ||    
T  46516844 cacccagtgagtcaattagagcaacgatatcaccaaccaaatgtaaaattgtgtagctactaactgaagtgggagcatcagtgtcaccgtagccacagag 46516943  T
Q  516 atctggagcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaact 615  Q
    ||||||||| || |  ||||| || |||||||  |||||  ||||||||||||||||||| ||||||| |||||| || || ||||||||||| || | |    
T  46516944 atctggagccacggtgcggtagccaagggagctgagagcaacaatctggtggcgccatgagtaccagatttcaggaaaaccatgaaggaacaatactatt 46517043  T
Q  616 ggaccttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtgctc 680  Q
    || |||||||||||||||||||| | |||||||||||| |||||||||||||| |||||||||||    
T  46517044 ggtccttcttttcctttctctgcgacatgcattttgattccattcacttccactgttctgtgctc 46517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 321 - 677
Target Start/End: Original strand, 46532009 - 46532365
Alignment:
Q  321 acagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccg 420  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||     
T  46532009 acagacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacacca 46532108  T
Q  421 agtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctg 520  Q
    ||  | || || || ||||| |  ||||| || | ||| ||    |||||||||||||||||||  ||||| |||||||| || |||||||| |||||||    
T  46532109 agcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcggtgtcaccatagccacgcagatctg 46532208  T
Q  521 gagcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggacc 620  Q
    ||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||    
T  46532209 gagcaacggcgcggtaaccgagggagccaagagctacaatttggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtcc 46532308  T
Q  621 ttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtg 677  Q
    |||||||||||| || ||||||||||||||||| |||||||| ||||| ||||||||    
T  46532309 ttcttttcctttttcagcaatatgcattttgattccattcacctccactgttctgtg 46532365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 321 - 677
Target Start/End: Original strand, 46524456 - 46524812
Alignment:
Q  321 acagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccg 420  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| ||     
T  46524456 acagacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagcaacaagaaacacttgatcaacaccc 46524555  T
Q  421 agtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctg 520  Q
    ||  | || || || ||||| | |||||| || | ||| ||   ||||||||| || | |||||  |||||||||||||| || |||||||| ||||| |    
T  46524556 agaaaatctataagtgcaacaagatcacctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgg 46524655  T
Q  521 gagcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggacc 620  Q
    |||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||    
T  46524656 gagcaacagcacggtagccgagggagctgagagctacaatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtcc 46524755  T
Q  621 ttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtg 677  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||||  |||||||    
T  46524756 ttctttacctttctcagcaatatgcattttgattccattcacttccactcttctgtg 46524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 221 - 680
Target Start/End: Complemental strand, 46323203 - 46322744
Alignment:
Q  221 gaacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttct--gggtaaatacggcacactc 318  Q
    ||||||| |||||  ||||||| |||||||||||| |   ||| |||||||||||||| | | | | ||| ||||||||  | ||||||  || |||||     
T  46323203 gaacctgaaatctagagatataataatcatctccataagcagcacgcatgccatcaacagttctgattttagggtttctacgcgtaaat--ggaacactg 46323106  T
Q  319 aaacagacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgc 418  Q
    | ||| ||||| ||||||||| ||||||||||||| |  ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  46323105 agacaaacataggctttgattctttcagggcgaaacatgcaaaggtaccaaccaatgatggcaccccaatcatgagctacaagaaacacttgatcaacgc 46323006  T
Q  419 cgagtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatc 518  Q
    | ||  | || || || ||||| | |||||| || | ||| ||   ||||||||||||||||||||  ||||| || ||||| || |||||||| |||||    
T  46323005 caagcaaatctataagtgcaaccagatcacctacaatgtgaaaacctgtgtagctgcttattgaagatggagcctcagtgtcaccatagccacgtagatc 46322906  T
Q  519 tggagcaacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactgga 618  Q
     ||||| || || ||||| ||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||     
T  46322905 cggagctacggcgcggtagccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggt 46322806  T
Q  619 ccttcttttcctttctctgcaatatgcattttgatgccattcacttccaccgttctgtgctc 680  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  46322805 ccttctttacctttctcagcaatatgcattttgattccattcacttccactcttctgtgctc 46322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 325 - 674
Target Start/End: Complemental strand, 46326804 - 46326455
Alignment:
Q  325 acataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtg 424  Q
    ||||| ||||||||| ||||||||||||| | |||||||||||||||||| |||||||||  ||||||| | |||||||| ||||| || || || ||      
T  46326804 acataggctttgattctttcagggcgaaacatacaaagataccaaccaatgatggcacccatatcatgaccaacaaggaaaacttgttccacaccaagca 46326705  T
Q  425 agtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagc 524  Q
    |||||||||||| ||| || ||||| || | ||| ||   |||||||||||| || ||||  ||| |||| ||||| || |||||||| ||||| |||||    
T  46326704 agtcgatgagagaaacaatgtcaccaactacgtgaaaacatgtgtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagc 46326605  T
Q  525 aacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttct 624  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  46326604 aacagcacggtaaccgagggatccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttct 46326505  T
Q  625 tttcctttctctgcaatatgcattttgatgccattcacttccaccgttct 674  Q
    || |||||||| ||||||||||||||||| |||||||||||||| |||||    
T  46326504 ttacctttctcagcaatatgcattttgattccattcacttccactgttct 46326455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 325 - 473
Target Start/End: Original strand, 46464839 - 46464985
Alignment:
Q  325 acataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtg 424  Q
    ||||| ||||||| | ||||||| ||||| |||||  ||||||||||| | | |||||||||||||||||| ||||  || ||||| ||||| || ||||    
T  46464839 acataggctttgactctttcaggacgaaacaaaca--gataccaaccagttaaggcaccccaatcatgagcaacaaaaaagacttgatcaaccccaagtg 46464936  T
Q  425 agtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagct 473  Q
    |||| |||||||||||||| ||||| || ||||||||||||||||||||    
T  46464937 agtctatgagagcaacgatgtcaccaactaagtggaagattgtgtagct 46464985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 6392363 - 6392421
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6392363 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 6392421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 29737497 - 29737555
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29737497 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 29737555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 40232323 - 40232265
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40232323 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 40232265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4041038 - 4041097
Alignment:
Q  19 ggatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  4041038 ggatttaccccttataaatacttgttgtggtccccatgttaaagtttgtagtggaacaaa 4041097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 24300352 - 24300294
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  24300352 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtgaaacaaa 24300294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 41427856 - 41427798
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  41427856 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtgaaacaaa 41427798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 27596293 - 27596224
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||| |||||    
T  27596293 gatttaccctttataaatactttttgtggt-cccatgttaaagtttgtagtgaaacaaagaaaataatcat 27596224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 38276753 - 38276695
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  38276753 gatttaccccttataaatactttttgtggtcctcatattaaagtttgtagtggaacaaa 38276695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 48838153 - 48838210
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  48838153 atttaccccttataaatactttttgtggtctccatgtaaaagtgtgtagtggaacaaa 48838210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 25943853 - 25943797
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| ||||||||||||| ||  |||||||||||||||| ||||||||||||||    
T  25943853 gatttaccccttataaatactttatg--gtccccatgttaaagtttgtagtggaacaaa 25943797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 31689561 - 31689503
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||| | ||||| ||||||    
T  31689561 gatttaccccttatatatactttttgtggtcctcatgttaaagtttatagtgaaacaaa 31689503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 21443005 - 21442952
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaa 74  Q
    ||||| || ||||||||||||||||||||| |||||| ||||| || |||||||    
T  21443005 atttatcccttataaatactttttgtggtctccatgtaaaagtttgcagtggaa 21442952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 325 - 575
Target Start/End: Complemental strand, 7475558 - 7475308
Alignment:
Q  325 acataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtg 424  Q
    ||||| ||||||||| |||||||||||||    ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| || ||      
T  7475558 acataggctttgattctttcagggcgaaacgtgcaaaggtaccaaccaatgatggcaccccaatcatgagccacaagaaacacttgatcaacaccaagaa 7475459  T
Q  425 agtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagc 524  Q
    | || || || ||||| |  ||||| ||||  || ||   ||||||||||||||||||||  |||| ||||||||| || |||||||| ||||| | |||    
T  7475458 aatctataagtgcaacaaggtcaccaaccatatgaaaccctgtgtagctgcttattgaagatggagaatcggtgtcaccatagccacggagatcagtagc 7475359  T
Q  525 aacagcacggtaaccgagggagccaagagctgcaatctggtggcgccatga 575  Q
     ||  || |||| ||||||||||  ||||||  ||||||||||||||||||    
T  7475358 cacgacatggtagccgagggagctgagagctataatctggtggcgccatga 7475308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 48737619 - 48737688
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  48737619 atttaccctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 48737688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 40496865 - 40496923
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40496865 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 40496923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 41346139 - 41346197
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41346139 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 41346197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 51545754 - 51545812
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51545754 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 51545812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 54014329 - 54014387
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54014329 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 54014387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 48169816 - 48169874
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48169816 gatttatcccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 48169874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 50676567 - 50676624
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  50676567 gatttaccccttataaatactttttgtggt-cccatgttaaagtttgtagtggaacaaa 50676624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 12568216 - 12568173
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagt 63  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  12568216 gatttaccccttataaatactttttgtggtccccatgttaaagt 12568173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 13544680 - 13544637
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagt 63  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  13544680 gatttaccccttataaatactttttgtggtccccatgttaaagt 13544637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 24709102 - 24709160
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||| || |||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  24709102 gatttatcctttataaatactttttgtggtcctcatgttaaagtttgtagtgaaacaaa 24709160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 38070103 - 38070033
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  38070103 gatttacccattataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 38070033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 11254592 - 11254662
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  11254592 gatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 11254662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 17493618 - 17493680
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaa 82  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17493618 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaataaa 17493680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 18575130 - 18575190
Alignment:
Q  30 ttataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  18575130 ttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 18575190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 27820865 - 27820923
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  27820865 gatttaccccttataaatactttttgtggtccccatgttaaaatttgtagtggaacaaa 27820923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 12738573 - 12738516
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  12738573 atttaccccttataaatattttttgtgatccccatgttaaagtttgtagtggaacaaa 12738516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 17336178 - 17336121
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaa 77  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||    
T  17336178 gatttaccccttataaatactttttgtggttcccatgttaaagtttctagtggaacaa 17336121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39907002 - 39907058
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  39907002 gatttaccccttataaatactttttgtggt--ccatgttaaagtttgtagtggaacaaa 39907058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 13243749 - 13243684
Alignment:
Q  25 acccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||| ||||||||||||||||||||| | |||| ||||| |||||||||||||| ||||| |||||    
T  13243749 accccttataaatactttttgtggtctcaatgtaaaagtttgtagtggaacaaagaaaataatcat 13243684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 36982278 - 36982348
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  36982278 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaataaaataatcat 36982348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 14044148 - 14044210
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaa 82  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14044148 gatttacctcttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaataaa 14044210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 42897582 - 42897524
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42897582 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 42897524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 2970871 - 2970815
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||  |||||||||||||||||||| | ||| |||||| ||||||||||||||    
T  2970871 atttaccccgtataaatactttttgtggtctcaatg-taaagtttgtagtggaacaaa 2970815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 10801 - 10731
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  10801 gatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 10731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 28541795 - 28541725
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  28541795 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaaaaaaataatcat 28541725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 13042064 - 13042134
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |||||    
T  13042064 gatttaccccttataaatactttttgtggtccctatgttaaagtttgtagtggaacaaagaaaataatcat 13042134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 7271286 - 7271232
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaa 74  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  7271286 gatttaccccttataaatactttttgttgtccccatgttaaagtttgtagtggaa 7271232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 29182683 - 29182753
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||  |||||||||| |||||||||||| |||||||||| |||||||||||||| ||||| |||||    
T  29182683 gatttacctcttataaatacattttgtggtccctatgttaaagtttgtagtggaacaaagaaaataatcat 29182753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 13210437 - 13210494
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  13210437 atttacccattataaatattttttgtggtctccatgtaaaagtttgtagtggaacaaa 13210494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1241201 - 1241259
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||  |||||||||||||||||||||||||| ||||||| || |||||||||||    
T  1241201 gatttacctcttataaatactttttgtggtccccatattaaagtttgcagtggaacaaa 1241259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 16435871 - 16435929
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||||  ||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  16435871 gatttaccccatataaatactttttgtggttctcatgttaaagtttgtagtggaacaaa 16435929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 30736511 - 30736569
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||  ||||||||||||||| ||||| ||||||||    
T  30736511 gatttaccccttataaatactttttgtaatccccatgttaaagtttgtagaggaacaaa 30736569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1870627 - 1870684
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| |||||||||||||||||| || |||||| ||||| ||||||||||||||    
T  1870627 atttaccccttataaatactttttgtgatctccatgtaaaagtttgtagtggaacaaa 1870684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 12350364 - 12350414
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagt 70  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||| ||||||    
T  12350364 gatttaccccttatatatactttttgtggtcctcatgttaaagtttgtagt 12350414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 45080626 - 45080556
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  45080626 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 45080556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2110312 - 2110370
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2110312 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 2110370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 28585891 - 28585833
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28585891 gatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 28585833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 29194080 - 29194150
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |||||    
T  29194080 gatttaccccttataaatactttttgtggtcccgatgttaaagtttgtagtggaacaaagaaaataatcat 29194150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 43370766 - 43370824
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43370766 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 43370824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 1779280 - 1779226
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaa 74  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  1779280 gatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtggaa 1779226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 4828296 - 4828239
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  4828296 atttaccccttataaatactttttgtggtccccatgttaaagtttatagtggaacaaa 4828239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 39646533 - 39646476
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  39646533 atttaccccttataaatactttttgtggtcctcatgtaaaagtttgtagtggaacaaa 39646476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 8381524 - 8381466
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||  ||||||||| | ||||||||||||||    
T  8381524 gatttaccccttataaatactttttgtggtcttcatgttaaaatttgtagtggaacaaa 8381466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 42847114 - 42847045
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||||| |||||||||||||||||| || |||||| ||||| |||| ||||||||| ||||| |||||    
T  42847114 atttaccccttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaaataatcat 42847045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 43377404 - 43377356
Alignment:
Q  30 ttataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||||||||||| ||| ||| || ||||| ||||||||||||||    
T  43377404 ttataaatactttttgtagtctccaagtaaaagtttgtagtggaacaaa 43377356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 925344 - 925286
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  925344 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 925286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 20789765 - 20789835
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  20789765 gatttatcccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 20789835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39788085 - 39788143
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39788085 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 39788143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 40071657 - 40071599
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40071657 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 40071599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 47199578 - 47199648
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  47199578 gatttaccccatataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcat 47199648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 54438365 - 54438307
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54438365 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 54438307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 17493845 - 17493909
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaat 84  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  17493845 gatttaccccttataaaaactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaat 17493909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 52101140 - 52101204
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaat 84  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  52101140 gatttaccctttataaatactttttgtggttcccatgttaaagtttgtagtggaacaaagaaaat 52101204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 21240418 - 21240476
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21240418 gatttaccccatataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 21240476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 32218145 - 32218087
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  32218145 gatttaccccttataaatactttttgtggttcccatgttaaagtttgtagtggaacaaa 32218087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 37064960 - 37064903
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  37064960 atttaccccttataaatactttttgtggtcctcatgttaaagtttgtagtggaacaaa 37064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 358 - 680
Target Start/End: Complemental strand, 88357 - 88038
Alignment:
Q  358 caaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagt 457  Q
    |||| ||||||||| || || ||||||||||||||  | |||||| |||||| ||| || || || ||||| ||||| |||| |||||||||||| | ||    
T  88357 caaacataccaaccgatgattgcaccccaatcatgtccgacaaggtacactttgtccacccctagagagtcaatgagtgcaatgatatcacccacaaggt 88258  T
Q  458 ggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgc 557  Q
    | ||    |||||| || | | |||  | ||||| || ||||| |||||||| |||||||| || || || |||||||||||   |||||  | | |       
T  88257 gaaaacaggtgtagttggtcactgattctggagcttcagtgtcaccgtagccccgaagatcaggggccactgcacggtaacccttggagctcaaatccag 88158  T
Q  558 aatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgcca 657  Q
    |||||| |||||||| || ||||| || |||||||| ||||| |  | ||| || ||||||||||||   ||||||||||||| ||||||||| ||||||    
T  88157 aatctgatggcgccaagagtaccatagctcagggaaaccgtgcaacatcaacaccactggaccttct---cctttctctgcaacatgcattttaatgcca 88061  T
Q  658 ttcacttccaccgttctgtgctc 680  Q
    || ||||| ||  ||||||||||    
T  88060 tttacttctactattctgtgctc 88038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 34408865 - 34408795
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||||  |||||| ||||| |||||    
T  34408865 gatttaccccttataaatactttttgtggtccacatgttaaagtttgtagtataacaaagaaaataatcat 34408795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 46870700 - 46870757
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  46870700 atttatcccttataaatactttttgtggtccccatgtaaaagtttgtagtggaacaaa 46870757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 53509840 - 53509780
Alignment:
Q  30 ttataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaattatcat 90  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||||| ||||| |||||    
T  53509840 ttataaatactttttgtgatccccatgttaaaatttgtagtggaacaaagaaaataatcat 53509780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 33800990 - 33800933
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||  |||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  33800990 gatttacctcttataaatactttt-gtggtccccatattaaagtttgtagtggaacaaa 33800933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3172226 - 3172169
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||  ||||||||||||||||||||| | |||| ||||| ||||||||||||||    
T  3172226 atttaccttttataaatactttttgtggtctcaatgtaaaagtttgtagtggaacaaa 3172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 28910363 - 28910306
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| ||||||||||||||||||||  |||||| ||||| | ||||||||||||    
T  28910363 atttaccccttataaatactttttgtggtttccatgtaaaagtttctagtggaacaaa 28910306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 51744692 - 51744657
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccat 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  51744692 gatttaccccttataaatactttttgtggtccccat 51744657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 596
Target Start/End: Original strand, 49833648 - 49833685
Alignment:
Q  559 atctggtggcgccatgaataccagagttcagggaagcc 596  Q
    ||||||||||||||||||||||| || |||||||||||    
T  49833648 atctggtggcgccatgaataccatagatcagggaagcc 49833685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 32045925 - 32045983
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32045925 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 32045983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 46862648 - 46862706
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46862648 gatttaccccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 46862706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 358 - 680
Target Start/End: Original strand, 37151873 - 37152192
Alignment:
Q  358 caaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagt 457  Q
    |||| ||||||||| || || ||||||||||||||  | |||||| |||||| ||| || || || ||||| ||||| |||| |||||||||||| | ||    
T  37151873 caaacataccaaccgatgattgcaccccaatcatgtccgacaaggtacactttgtccacccctagagagtcaatgagtgcaatgatatcacccacaaggt 37151972  T
Q  458 ggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgc 557  Q
    | ||    ||||||||| | | |||  | ||||| || ||||| |||||||| |||||||| || || || |||||||||||   |||||  | | |       
T  37151973 gaaaacaggtgtagctggtcactgattctggagcttcagtgtcaccgtagccccgaagatcaggggccactgcacggtaacccttggagctcaaatccag 37152072  T
Q  558 aatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgcca 657  Q
    |||||| |||||||| || ||||| || |||||||| ||||| |  | ||| || ||||||||||||   ||||||||||||| ||||||||| ||||||    
T  37152073 aatctgatggcgccaagagtaccatagctcagggaaaccgtgcaacatcaacaccactggaccttct---cctttctctgcaacatgcattttaatgcca 37152169  T
Q  658 ttcacttccaccgttctgtgctc 680  Q
    || ||||| ||  ||||||||||    
T  37152170 tttacttctactattctgtgctc 37152192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 1929424 - 1929361
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaataaaa 83  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  1929424 gatttaccccttataaatattttttgtggtccccatgttaaagtttgtagtggaacaaaaaaaa 1929361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 28036909 - 28036851
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28036909 gatttatcccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 28036851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38321737 - 38321795
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38321737 gatttaacccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaa 38321795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 39151105 - 39151047
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  39151105 gatttaccccttataaatactttttgtggtcctcatgttaaagtttgtagtggaacaaa 39151047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 50777089 - 50777147
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  50777089 gatttaccccttataaatactttttggggtccccatgttaaagtttgtagtggaacaaa 50777147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 8229156 - 8229206
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtg 71  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  8229156 atttaccccttataaatactttttgtggtccccatgttaaagtttgtagtg 8229206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 38817867 - 38817924
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  38817867 atttaccccttataaatactttttgtggtccccatgtaaaagtttgtagtgaaacaaa 38817924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 46371020 - 46371076
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  46371020 atttaccccttataaatactttttgtggt-cccatattaaagtttgtagtggaacaaa 46371076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 9129609 - 9129552
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| ||||||||| ||||||||||| |||||| ||| | ||||||||||||||    
T  9129609 atttaccccttataaatattttttgtggtctccatgtaaaattttgtagtggaacaaa 9129552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 40562641 - 40562584
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||||| ||||||||||| ||||||||| |||||| ||||| |||||| |||||||    
T  40562641 atttaccccttataaatactctttgtggtctccatgtaaaagtttgtagtagaacaaa 40562584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 16449 - 16507
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  16449 gatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtgaaacaaa 16507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 10225 - 10167
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    |||||| || |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  10225 gatttatcccttataaatactttttgtggtccccatgttaaagtttatagtggaacaaa 10167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1072 - 1128
Alignment:
Q  21 atttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaa 77  Q
    |||||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  1072 atttaccccttataaatactttttgtggtctccatgtaaaagtttgtagtggaacaa 1128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 3906 - 3964
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||| |||| |||||||||    
T  3906 gatttacctcttataaatactttttgcggtcctcatgttaaagtttgtaatggaacaaa 3964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 69845 - 69903
Alignment:
Q  20 gatttacccattataaatactttttgtggtccccatgttaaagtctgtagtggaacaaa 78  Q
    ||||||||  |||||||||||||||||| ||||| | ||||||| ||||||||||||||    
T  69845 gatttaccgcttataaatactttttgtgatccccgtattaaagtttgtagtggaacaaa 69903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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