View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_low_31 (Length: 312)

Name: NF19104_low_31
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_low_31
NF19104_low_31
[»] chr8 (13 HSPs)
chr8 (18-309)||(36675093-36675387)
chr8 (261-305)||(35967419-35967463)
chr8 (261-312)||(7325726-7325780)
chr8 (261-312)||(37392134-37392188)
chr8 (257-312)||(45081394-45081452)
chr8 (277-312)||(21648937-21648972)
chr8 (260-312)||(38174239-38174295)
chr8 (260-312)||(1370291-1370346)
chr8 (261-312)||(5740791-5740845)
chr8 (276-312)||(6105442-6105478)
chr8 (261-308)||(14233654-14233704)
chr8 (276-312)||(29509295-29509331)
chr8 (261-312)||(41776186-41776240)
[»] chr5 (10 HSPs)
chr5 (258-312)||(5386081-5386135)
chr5 (261-312)||(14206400-14206454)
chr5 (261-312)||(9940070-9940121)
chr5 (261-312)||(17574230-17574281)
chr5 (277-312)||(18449291-18449326)
chr5 (261-311)||(14923083-14923135)
chr5 (261-312)||(6865793-6865847)
chr5 (261-312)||(13734366-13734420)
chr5 (276-312)||(21023327-21023363)
chr5 (261-312)||(39458668-39458722)
[»] chr2 (22 HSPs)
chr2 (261-312)||(24361505-24361556)
chr2 (259-312)||(23141365-23141418)
chr2 (259-312)||(23553155-23553208)
chr2 (261-312)||(43205107-43205158)
chr2 (260-312)||(3932970-3933023)
chr2 (276-312)||(546391-546427)
chr2 (261-312)||(42081048-42081102)
chr2 (277-312)||(6639478-6639513)
chr2 (258-312)||(7121387-7121444)
chr2 (258-312)||(45202138-45202195)
chr2 (261-312)||(4263870-4263923)
chr2 (264-312)||(30996742-30996793)
chr2 (258-312)||(37737983-37738039)
chr2 (261-312)||(4138191-4138245)
chr2 (280-312)||(5191700-5191732)
chr2 (276-312)||(6851665-6851701)
chr2 (276-312)||(7497997-7498033)
chr2 (272-312)||(30340018-30340058)
chr2 (261-312)||(40700207-40700261)
chr2 (276-312)||(42554805-42554841)
chr2 (276-312)||(42665818-42665854)
chr2 (261-312)||(43725216-43725270)
[»] chr1 (22 HSPs)
chr1 (261-312)||(3904199-3904250)
chr1 (261-312)||(5383773-5383824)
chr1 (261-312)||(12972710-12972761)
chr1 (276-312)||(2257700-2257736)
chr1 (261-312)||(14983784-14983838)
chr1 (261-312)||(21441649-21441701)
chr1 (276-312)||(30530405-30530441)
chr1 (261-312)||(36954671-36954723)
chr1 (261-312)||(45272166-45272220)
chr1 (260-312)||(48689569-48689621)
chr1 (260-312)||(40139125-40139180)
chr1 (260-312)||(41507200-41507255)
chr1 (261-312)||(3826821-3826875)
chr1 (261-312)||(5975548-5975602)
chr1 (261-312)||(11121492-11121546)
chr1 (260-312)||(29094752-29094804)
chr1 (276-312)||(33422225-33422261)
chr1 (261-312)||(40596060-40596114)
chr1 (261-312)||(44950427-44950481)
chr1 (250-282)||(48872004-48872036)
chr1 (261-312)||(49453491-49453545)
chr1 (276-312)||(52417560-52417596)
[»] chr6 (10 HSPs)
chr6 (258-312)||(22422161-22422215)
chr6 (260-312)||(32644622-32644677)
chr6 (277-312)||(18792438-18792473)
chr6 (261-312)||(1196058-1196112)
chr6 (261-312)||(12441538-12441592)
chr6 (276-312)||(19789082-19789118)
chr6 (276-312)||(25924870-25924906)
chr6 (276-312)||(28965846-28965882)
chr6 (276-312)||(30253319-30253355)
chr6 (261-312)||(31517186-31517240)
[»] chr4 (18 HSPs)
chr4 (260-312)||(8614189-8614241)
chr4 (260-312)||(4974110-4974165)
chr4 (272-312)||(14090056-14090096)
chr4 (261-312)||(42490920-42490974)
chr4 (261-312)||(32294766-32294817)
chr4 (258-312)||(39241307-39241364)
chr4 (261-312)||(46686245-46686298)
chr4 (258-312)||(1580289-1580345)
chr4 (260-312)||(24310527-24310582)
chr4 (279-312)||(36444401-36444434)
chr4 (276-312)||(1688434-1688470)
chr4 (260-312)||(15515794-15515849)
chr4 (276-312)||(17363259-17363295)
chr4 (276-312)||(29513702-29513738)
chr4 (276-312)||(45274294-45274330)
chr4 (276-312)||(46912805-46912841)
chr4 (276-312)||(51224844-51224880)
chr4 (276-312)||(56025285-56025321)
[»] chr3 (19 HSPs)
chr3 (261-309)||(31300816-31300864)
chr3 (261-312)||(21481778-21481829)
chr3 (278-312)||(45295745-45295779)
chr3 (261-312)||(38957518-38957571)
chr3 (264-312)||(23585131-23585180)
chr3 (264-312)||(23599954-23600003)
chr3 (264-312)||(34592080-34592129)
chr3 (276-312)||(622466-622502)
chr3 (261-308)||(23553786-23553834)
chr3 (261-312)||(29057659-29057713)
chr3 (261-312)||(29846897-29846951)
chr3 (272-312)||(30664528-30664568)
chr3 (261-312)||(35368622-35368676)
chr3 (276-312)||(41877717-41877753)
chr3 (276-312)||(43900763-43900799)
chr3 (276-312)||(44334807-44334843)
chr3 (261-312)||(46952949-46953003)
chr3 (261-312)||(47683801-47683855)
chr3 (261-312)||(48490519-48490573)
[»] chr7 (17 HSPs)
chr7 (260-309)||(8459613-8459665)
chr7 (276-312)||(5724067-5724103)
chr7 (258-312)||(8742391-8742448)
chr7 (261-312)||(43942649-43942702)
chr7 (261-312)||(2323304-2323358)
chr7 (261-312)||(2469703-2469757)
chr7 (276-312)||(5378656-5378692)
chr7 (261-312)||(6822539-6822593)
chr7 (261-312)||(22330637-22330691)
chr7 (261-310)||(26749017-26749068)
chr7 (261-312)||(27570355-27570409)
chr7 (261-308)||(34270794-34270842)
chr7 (272-312)||(34349033-34349073)
chr7 (261-310)||(35098790-35098841)
chr7 (261-312)||(37351996-37352050)
chr7 (261-312)||(43213319-43213373)
chr7 (272-312)||(45335887-45335927)
[»] scaffold0054 (1 HSPs)
scaffold0054 (261-312)||(31606-31660)
[»] scaffold0511 (1 HSPs)
scaffold0511 (277-312)||(11668-11703)
[»] scaffold0172 (1 HSPs)
scaffold0172 (276-312)||(17004-17040)
[»] scaffold0155 (1 HSPs)
scaffold0155 (261-312)||(3277-3331)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 36675093 - 36675387
Alignment:
Q  18 acacatcattatagaatctttctgtccttattagaagtaatatatcacatgatgataggaaattttaatgactagcatgtgattttcacattaatttgat 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36675093 acacatcattatagaatctttttgtccttattagaagtaatatatcacatgatgataggaaattttaatgactagcatgtgattttcacattaatttgat 36675192  T
Q  118 aattatataacagttaatataattacacaaatatacaaaattgttttagaaataacaaatgttagttttaatgatgtagacaaggatagaaggttaaacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36675193 aattatataacagttaatataattacacaaatatacaaaattgttttagaaataacaaatgttagttttaatgatgttgacaaggatagaaggttaaacc 36675292  T
Q  218 ttcttaccacttcacttcttaactcttgccttcattatgctttgagaaatgatatttgtacaac---tttttaacaactatctctctcatactca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||  |||||| | |||||||||||||    
T  36675293 ttcttaccacttcacttcttaactcttgccttcattatgctttgagaaatgatatttgtacaaccatttttgtacaactttttctctcatactca 36675387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 35967463 - 35967419
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcata 305  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  35967463 gagaaatgatatttgtacaactttttgacaactttctctctcata 35967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 7325726 - 7325780
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||| |||||||| ||||||||||||||||||    
T  7325726 gagaaatgatatttgtacatccactttataacaactttctctctcatactcacat 7325780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 37392188 - 37392134
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  37392188 gagaaatgatatttgtacaaccattttttgacaactttctctctcatactcacat 37392134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 45081394 - 45081452
Alignment:
Q  257 ctttgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||   |||||||||| | | ||||||||||||||||    
T  45081394 ctttgagaaatgatatttgtacaaccaatttttaacaattttgtctctcatactcacat 45081452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 21648972 - 21648937
Alignment:
Q  277 acaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21648972 acaactttttaacaactttctctctcatactcacat 21648937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 38174295 - 38174239
Alignment:
Q  260 tgagaaatgatatttgtacaact---tttta-acaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  38174295 tgagaaatgatatttgtacaactatcttttagacaactttctctctcatactcacat 38174239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 1370346 - 1370291
Alignment:
Q  260 tgagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||   ||||| |||||||| |||||| |||||||||||    
T  1370346 tgagaaatgatatttgtacaaccactttgtaacaactttctctcacatactcacat 1370291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 5740845 - 5740791
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| | ||||||||||||||||    
T  5740845 gagaaatgatatttgtacaaccactttttgacaactttttctctcatactcacat 5740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 6105478 - 6105442
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6105478 tacaactttttgacaactttctctctcatactcacat 6105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 14233704 - 14233654
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactc 308  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||||||    
T  14233704 gagaaatgatatttgtacaactatttttttacaactttctctctcatactc 14233654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 29509295 - 29509331
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  29509295 tacaactttttgacaactttctctctcatactcacat 29509331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 41776186 - 41776240
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  41776186 gagaaatgatatttgtacaactatttttgtacaactttctctctcatactcacat 41776240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 5386081 - 5386135
Alignment:
Q  258 tttgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  5386081 tttgagaaatgatatttgtacaacttttaaacaactttctctctcatactcacat 5386135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 14206400 - 14206454
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  14206400 gagaaatgatatttgtacaaccattttttgacaactttctctctcatactcacat 14206454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 9940070 - 9940121
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||| ||||||||||||||| |  |||||| ||||||||||||||||||    
T  9940070 gagaaataatatttgtacaacttatatacaactttctctctcatactcacat 9940121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 17574281 - 17574230
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||| |||| ||||||||||||  |||||| ||||||||||||||||||    
T  17574281 gagaaataatatctgtacaacttttgtacaactttctctctcatactcacat 17574230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 18449291 - 18449326
Alignment:
Q  277 acaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18449291 acaactttttaacaactttctctctcatactcacat 18449326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 14923083 - 14923135
Alignment:
Q  261 gagaaatgatatttgtacaac--tttttaacaactatctctctcatactcaca 311  Q
    ||||||||||||||| |||||  ||||| |||||| |||||||||||||||||    
T  14923083 gagaaatgatatttgaacaaccattttttacaactttctctctcatactcaca 14923135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 6865847 - 6865793
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  6865847 gagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcacat 6865793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 13734420 - 13734366
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  13734420 gagaaatgatatttgtacaaccactttatgacaactttctctctcatactcacat 13734366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 21023327 - 21023363
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  21023327 tacaactttttgacaactttctctctcatactcacat 21023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 39458668 - 39458722
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||| ||||||||   ||||| |||||| ||||||||||||||||||    
T  39458668 gagaaatgatatctgtacaaccagtttttgacaactttctctctcatactcacat 39458722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 24361505 - 24361556
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||    
T  24361505 gagaaatgatatttgtacaactttttgacaactttctatctcatactcacat 24361556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 23141365 - 23141418
Alignment:
Q  259 ttgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||| ||||  |||||| ||||||||||||||||||    
T  23141365 ttgagaaatgatatttgtacaatttttgtacaactgtctctctcatactcacat 23141418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 23553155 - 23553208
Alignment:
Q  259 ttgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||| ||||  |||||| ||||||||||||||||||    
T  23553155 ttgagaaatgatatttgtacaatttttgtacaactgtctctctcatactcacat 23553208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 43205107 - 43205158
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  43205107 gagaaatgatatttgtacaacttttgtacaacattctctctcatactcacat 43205158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 3932970 - 3933023
Alignment:
Q  260 tgagaaatgatatttgt-acaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||    
T  3932970 tgagaaatgatatttgtgacaactttttgacaactatctctttcataatcacat 3933023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 546427 - 546391
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||| ||||||||||||||||||    
T  546427 tacaactttttaacaactttctctctcatactcacat 546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 42081048 - 42081102
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||||| |||||| ||||||||||||||||||    
T  42081048 gagaaatgatatttgtacagccactttttgacaactttctctctcatactcacat 42081102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 6639513 - 6639478
Alignment:
Q  277 acaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| ||||||||||||||||||    
T  6639513 acaactttttaacaactttctctctcatactcacat 6639478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 7121387 - 7121444
Alignment:
Q  258 tttgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||| |||   ||| |||||||| ||||||||||||||||||    
T  7121387 tttgagaaatgatatttgtataaccattttgtaacaactttctctctcatactcacat 7121444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 45202195 - 45202138
Alignment:
Q  258 tttgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||||   ||||| |||||| ||||||||||| ||||||    
T  45202195 tttgagaaatgatatttgtacaaccatttttttacaactttctctctcatattcacat 45202138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 4263923 - 4263870
Alignment:
Q  261 gagaaatgatatttgtacaac--tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||  ||||| |||||| ||||| ||||||||||||    
T  4263923 gagaaatgatatttgtacaacattttttgacaactttctctttcatactcacat 4263870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 30996742 - 30996793
Alignment:
Q  264 aaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||   ||||||| |||||| ||||||||||||||||||    
T  30996742 aaatgatatttgtacatttactttttgacaactttctctctcatactcacat 30996793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 37738039 - 37737983
Alignment:
Q  258 tttgagaaatgatatttgtacaac--tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||| |||||  ||||  |||||| ||||||||||||||||||    
T  37738039 tttgagaaatgatatttgaacaaccattttcgacaactttctctctcatactcacat 37737983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 4138245 - 4138191
Alignment:
Q  261 gagaaatgatatttgtacaacttttt---aacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| |||| |||   ||||||| ||||||||||||||||||    
T  4138245 gagaaatgatatttgtataactattttctaacaactttctctctcatactcacat 4138191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 5191732 - 5191700
Alignment:
Q  280 actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||| ||||||||||||||||||    
T  5191732 actttttaacaactttctctctcatactcacat 5191700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 6851701 - 6851665
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6851701 tacaactttttgacaactttctctctcatactcacat 6851665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 7498033 - 7497997
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  7498033 tacaactttttgacaactttctctctcatactcacat 7497997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30340018 - 30340058
Alignment:
Q  272 tttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  30340018 tttgtacaacttttgtacaactttctctctcatactcacat 30340058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 40700207 - 40700261
Alignment:
Q  261 gagaaatgatatttgtacaacttttt---aacaactatctctctcatactcacat 312  Q
    |||||||| ||||||||||||| |||   ||||||| ||||||||||||||||||    
T  40700207 gagaaatggtatttgtacaactattttataacaactttctctctcatactcacat 40700261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 42554805 - 42554841
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  42554805 tacaacttttttacaactttctctctcatactcacat 42554841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 42665854 - 42665818
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  42665854 tacaactttttgacaactttctctctcatactcacat 42665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 43725216 - 43725270
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||| | |||||| ||||||||||||||||||    
T  43725216 gagaaatgatatttgtacatctactttatgacaactttctctctcatactcacat 43725270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 3904199 - 3904250
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  3904199 gagaaatgatatttgtataactctttaacaaccatctctctcatactcacat 3904250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 5383773 - 5383824
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||| |||||||||||||||||| |||||| | ||||||||||||||||    
T  5383773 gagaaattatatttgtacaactttttgacaactttttctctcatactcacat 5383824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 12972761 - 12972710
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  12972761 gagaaatgatatttgtacaacttttatacaacattctctctcatactcacat 12972710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 2257736 - 2257700
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2257736 tacaactttttaacaactttctctctcatactcacat 2257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 14983784 - 14983838
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||| ||||||    
T  14983784 gagaaatgatatttgtacaaccactttttaacaactttctctctcatattcacat 14983838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 21441649 - 21441701
Alignment:
Q  261 gagaaatgatatttgta-caactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||| || ||||||||| |||||| ||||||||||||||||||    
T  21441649 gagaaatgatatttctaacaactttttgacaactttctctctcatactcacat 21441701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 30530441 - 30530405
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30530441 tacaactttttaacaactttctctctcatactcacat 30530405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 36954671 - 36954723
Alignment:
Q  261 gagaaatgatatttgtacaac-tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||    
T  36954671 gagaaatgatatttgtacaacatttttgacaactttctttctcatactcacat 36954723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 45272220 - 45272166
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  45272220 gagaaatgatatttgtacaaccactttttgacaactttctctctcatactcacat 45272166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 48689569 - 48689621
Alignment:
Q  260 tgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||||||  | || | ||||||||||||||||||    
T  48689569 tgagaaatgatatttgtacaacttttgtataattttctctctcatactcacat 48689621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 40139125 - 40139180
Alignment:
Q  260 tgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  40139125 tgagaaatgatatttgtacaaccattttatgacaactttctctctcatactcacat 40139180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 41507255 - 41507200
Alignment:
Q  260 tgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  41507255 tgagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcacat 41507200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 3826875 - 3826821
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   |||||||||||| | ||||||||| ||||||    
T  3826875 gagaaatgatatttgtacaactaatttttaacaactttatctctcatattcacat 3826821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 5975548 - 5975602
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||| ||||||   ||||||| |||||| ||||||||||||||||||    
T  5975548 gagaaatgatatatgtacatccactttttgacaactttctctctcatactcacat 5975602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 11121492 - 11121546
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  11121492 gagaaatgatatttgtacaacaacttttgtacaactttctctctcatactcacat 11121546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 29094804 - 29094752
Alignment:
Q  260 tgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||   ||||   ||||||||||||||||||    
T  29094804 tgagaaatgatatttgtacaactttcgtacaatcttctctctcatactcacat 29094752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 33422261 - 33422225
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33422261 tacaactttttgacaactttctctctcatactcacat 33422225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 40596114 - 40596060
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  40596114 gagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcacat 40596060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 44950481 - 44950427
Alignment:
Q  261 gagaaatgatatttgt---acaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||| |||   ||||||||||||||||| ||||| ||||||||||||    
T  44950481 gagaaatgatatatgtttgacaactttttaacaactttctctttcatactcacat 44950427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 48872036 - 48872004
Alignment:
Q  250 cattatgctttgagaaatgatatttgtacaact 282  Q
    ||||||| |||||||||||||||||||||||||    
T  48872036 cattatgttttgagaaatgatatttgtacaact 48872004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 49453491 - 49453545
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||| | |||||| ||||||||||||||||||    
T  49453491 gagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcacat 49453545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 52417560 - 52417596
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  52417560 tacaactttttgacaactttctctctcatactcacat 52417596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 22422161 - 22422215
Alignment:
Q  258 tttgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| ||||||||||||||||  |||||| ||||||||||||||||||    
T  22422161 tttgagaaatgttatttgtacaacttttgtacaactttctctctcatactcacat 22422215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 32644622 - 32644677
Alignment:
Q  260 tgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  32644622 tgagaaatgatatttgtacaactattttttgacaactttctctctcatactcacat 32644677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 18792473 - 18792438
Alignment:
Q  277 acaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18792473 acaactttttaacaactttctctctcatactcacat 18792438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 1196058 - 1196112
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||||| |||||| ||||||| ||||||||||    
T  1196058 gagaaatgatatttgtacaatcactttttgacaactttctctctaatactcacat 1196112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 12441538 - 12441592
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||| | |||||| ||||||||||||||||||    
T  12441538 gagaaatgatatttgtacaactactttgtgacaactttctctctcatactcacat 12441592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 19789118 - 19789082
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  19789118 tacaactttttgacaactttctctctcatactcacat 19789082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 25924906 - 25924870
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  25924906 tacaactttttgacaactttctctctcatactcacat 25924870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 28965882 - 28965846
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  28965882 tacaactttttgacaactttctctctcatactcacat 28965846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 30253355 - 30253319
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  30253355 tacaattttttaacaactttctctctcatactcacat 30253319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 31517240 - 31517186
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| | ||||||||||||||||    
T  31517240 gagaaatgatatttgtacaaccactttttgacaactttttctctcatactcacat 31517186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 8614189 - 8614241
Alignment:
Q  260 tgagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  8614189 tgagaaatgatatttgtacaacttttgtacaaccttctctctcatactcacat 8614241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 4974110 - 4974165
Alignment:
Q  260 tgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||   |||||||||||| |||||||||||| |||||    
T  4974110 tgagaaatgatatttgtacaactattttttaacaactttctctctcatacccacat 4974165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 14090096 - 14090056
Alignment:
Q  272 tttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  14090096 tttgtacaacttttaaacaactttctctctcatactcacat 14090056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 42490920 - 42490974
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  42490920 gagaaatgatatttgtacaaccactttttgacaactttctctctcatactcacat 42490974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 32294817 - 32294766
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| |||||||  |||||  ||||||||||||||||||    
T  32294817 gagaaatgatatttgtataacttttgtacaaccttctctctcatactcacat 32294766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 39241364 - 39241307
Alignment:
Q  258 tttgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  39241364 tttgagaaatgatatttgtacaaccaatttgtgacaactttctctctcatactcacat 39241307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 46686245 - 46686298
Alignment:
Q  261 gagaaatgatatttgtacaac--tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||  ||||  |||||| ||||||||||||||||||    
T  46686245 gagaaatgatatttgtacaaccattttgtacaactttctctctcatactcacat 46686298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 1580345 - 1580289
Alignment:
Q  258 tttgagaaatgatatttgtaca--actttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||  ||||| | |||| | ||||||||||||||||||    
T  1580345 tttgagaaatgatatttgtacaacactttgtgacaattttctctctcatactcacat 1580289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 24310582 - 24310527
Alignment:
Q  260 tgagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  24310582 tgagaaatgatatttgtacaaccatttttgtacaactttctctctcatactcacat 24310527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 36444434 - 36444401
Alignment:
Q  279 aactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||| ||||||||||||||||||    
T  36444434 aactttttaacaactttctctctcatactcacat 36444401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 1688470 - 1688434
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  1688470 tacaacttttttacaactttctctctcatactcacat 1688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 15515794 - 15515849
Alignment:
Q  260 tgagaaatgatatttgtacaact-tttta--acaactatctctctcatactcacat 312  Q
    |||||||||||||| |||||||| |||||  |||||| ||||||||||||||||||    
T  15515794 tgagaaatgatattggtacaactattttatgacaactttctctctcatactcacat 15515849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 17363259 - 17363295
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  17363259 tacaactttttgacaactttctctctcatactcacat 17363295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 29513738 - 29513702
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  29513738 tacaactttttgacaactttctctctcatactcacat 29513702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 45274294 - 45274330
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  45274294 tacaactttttgacaactttctctctcatactcacat 45274330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 46912841 - 46912805
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  46912841 tacaattttttaacaactttctctctcatactcacat 46912805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 51224880 - 51224844
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  51224880 tacaactttttgacaactttctctctcatactcacat 51224844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 56025285 - 56025321
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  56025285 tacaactttttgacaactttctctctcatactcacat 56025321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 31300816 - 31300864
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactca 309  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||||    
T  31300816 gagaaatgatatttgtacaacttttagacaactttctctctcatactca 31300864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 21481778 - 21481829
Alignment:
Q  261 gagaaatgatatttgtacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||  |||||| | ||||||||||||||||    
T  21481778 gagaaatgatatttgtacaacttttgtacaactttttctctcatactcacat 21481829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 45295779 - 45295745
Alignment:
Q  278 caactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||||||||||||    
T  45295779 caactttttaacaactatctctctcatactcacat 45295745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 38957571 - 38957518
Alignment:
Q  261 gagaaatgatatttgtacaac--tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||  ||||| |||||| | ||||||||||||||||    
T  38957571 gagaaatgatatttgtacaactatttttgacaactttttctctcatactcacat 38957518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 23585131 - 23585180
Alignment:
Q  264 aaatgatatttgtacaa-ctttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| |||| | |||||| ||||||||||||||||||    
T  23585131 aaatgatatttgtacaaactttgtgacaactttctctctcatactcacat 23585180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 23599954 - 23600003
Alignment:
Q  264 aaatgatatttgtacaa-ctttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| |||| | |||||| ||||||||||||||||||    
T  23599954 aaatgatatttgtacaaactttgtgacaactttctctctcatactcacat 23600003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 34592080 - 34592129
Alignment:
Q  264 aaatgatatttgtacaactttt-taacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||| | |||||| ||||||||||||| ||||    
T  34592080 aaatgatatttgtacaacttttgtgacaactttctctctcatacttacat 34592129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 622502 - 622466
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  622502 tacaactttttgacaactttctctctcatactcacat 622466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 23553834 - 23553786
Alignment:
Q  261 gagaaatgatatttgtacaactttt-taacaactatctctctcatactc 308  Q
    ||||||||||||||| ||||||||| | |||||| ||||||||||||||    
T  23553834 gagaaatgatatttgaacaacttttgtgacaactttctctctcatactc 23553786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 29057659 - 29057713
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  29057659 gagaaatgatatttgtacaaccatttttgtacaactttctctctcatactcacat 29057713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 29846951 - 29846897
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  29846951 gagaaatgatatttgtacaaccatttttgtacaactttctctctcatactcacat 29846897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30664528 - 30664568
Alignment:
Q  272 tttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  30664528 tttgtacaacttttgtacaactttctctctcatactcacat 30664568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 35368622 - 35368676
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  35368622 gagaaatgatatttgtacaactatttttgtacaactttctctctcatactcacat 35368676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 41877717 - 41877753
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  41877717 tacaactttttgacaactttctctctcatactcacat 41877753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 43900799 - 43900763
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  43900799 tacaactttttgacaactttctctctcatactcacat 43900763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 44334843 - 44334807
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  44334843 tacaactttttgacaactttctctctcatactcacat 44334807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 46952949 - 46953003
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| | |||| ||||||||||||||||||    
T  46952949 gagaaatgatatttgtacaaccattttttgataactttctctctcatactcacat 46953003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 47683801 - 47683855
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  47683801 gagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcacat 47683855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 48490573 - 48490519
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||  |||||| ||||||||||||||||||    
T  48490573 gagaaatgatatttgtacaaccacttttgtacaactttctctctcatactcacat 48490519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 8459613 - 8459665
Alignment:
Q  260 tgagaaatgatatttgtacaac---tttttaacaactatctctctcatactca 309  Q
    ||||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  8459613 tgagaaatgatatttgtacaaccactttttaacaactttctctctcatactca 8459665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 5724067 - 5724103
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5724067 tacaactttttaacaactttctctctcatactcacat 5724103  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 8742391 - 8742448
Alignment:
Q  258 tttgagaaatgatatttgtacaact---ttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||||||   |||| |||||| | ||||||||||||||||    
T  8742391 tttgagaaatgatatttgtacaactatgttttgacaactttttctctcatactcacat 8742448  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 43942649 - 43942702
Alignment:
Q  261 gagaaatgatatttgtacaact--ttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||| ||||||  |||| |||||| ||||||||||||||||||    
T  43942649 gagaaatgatatttgaacaactattttttacaactttctctctcatactcacat 43942702  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 2323304 - 2323358
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  2323304 gagaaatgatatttgtacaacaattttatgacaactttctctctcatactcacat 2323358  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 2469703 - 2469757
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||| | |||||| ||||||||||||||||||    
T  2469703 gagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcacat 2469757  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 5378656 - 5378692
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  5378656 tacaactttttgacaactttctctctcatactcacat 5378692  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 6822593 - 6822539
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| |||||||| | ||||||||||||||||    
T  6822593 gagaaatgatatttgtacaaccattttctaacaactttttctctcatactcacat 6822539  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 22330691 - 22330637
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  22330691 gagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcacat 22330637  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 26749017 - 26749068
Alignment:
Q  261 gagaaatgatatttgtacaac--tttttaacaactatctctctcatactcac 310  Q
    ||||||||||||||| |||||  ||||| |||||| ||||||||||||||||    
T  26749017 gagaaatgatatttgaacaacaatttttgacaactttctctctcatactcac 26749068  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 27570355 - 27570409
Alignment:
Q  261 gagaaatgatatttgtacaact---ttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||| ||||||   |||||| |||| ||||||||||||||||||    
T  27570355 gagaaatgatatttgaacaactattttttaataactttctctctcatactcacat 27570409  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 34270842 - 34270794
Alignment:
Q  261 gagaaatgatatttgtacaactttt-taacaactatctctctcatactc 308  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  34270842 gagaaatgatatttgtacaacttttgggacaactctctctctcatactc 34270794  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 34349073 - 34349033
Alignment:
Q  272 tttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||| |||| | ||||||||||||||||||    
T  34349073 tttgtacaactttttgacaattttctctctcatactcacat 34349033  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 35098841 - 35098790
Alignment:
Q  261 gagaaatgatatttgt--acaactttttaacaactatctctctcatactcac 310  Q
    ||||||||||||||||  ||||||||| ||||||| ||||| ||||||||||    
T  35098841 gagaaatgatatttgttgacaacttttaaacaactttctctttcatactcac 35098790  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 37352050 - 37351996
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  37352050 gagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcacat 37351996  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 43213319 - 43213373
Alignment:
Q  261 gagaaatgatatttgtaca---actttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||   ||||| |||||| | ||||||||||||||||||    
T  43213319 gagaaatgatatttgtacaaccactttctaacaattttctctctcatactcacat 43213373  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 45335887 - 45335927
Alignment:
Q  272 tttgtacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  45335887 tttgtacaacttttgtacaactttctctctcatactcacat 45335927  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 31660 - 31606
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  31660 gagaaatgatatttgtacaaccattttttgacaactttctctctcatactcacat 31606  T

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Target: scaffold0511 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 11668 - 11703
Alignment:
Q  277 acaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11668 acaactttttaacaactttctctctcatactcacat 11703  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 17004 - 17040
Alignment:
Q  276 tacaactttttaacaactatctctctcatactcacat 312  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  17004 tacaactttttgacaactttctctctcatactcacat 17040  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 3331 - 3277
Alignment:
Q  261 gagaaatgatatttgtacaac---tttttaacaactatctctctcatactcacat 312  Q
    |||||||||||||||||||||   ||| | |||||| ||||||||||||||||||    
T  3331 gagaaatgatatttgtacaaccactttctcacaactttctctctcatactcacat 3277  T

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